miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 109062 0.66 0.649213
Target:  5'- aCGCGGCCccgauaaacGcCCGCgGgGCCCCCGcGGAg -3'
miRNA:   3'- -GUGUUGGa--------C-GGCGaCgCGGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 2943 0.66 0.649213
Target:  5'- gGCGGCCgggccggGCCGggacucuugcgcUUGCGCCCCUcccgcggcgcgGGGAg -3'
miRNA:   3'- gUGUUGGa------CGGC------------GACGCGGGGG-----------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 35547 0.66 0.639286
Target:  5'- -cCAGCgaGCCGCUcgGCGCgCCCGGc- -3'
miRNA:   3'- guGUUGgaCGGCGA--CGCGgGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 111808 0.66 0.639286
Target:  5'- aACAcCCUGUCGCucgUGCGCUUUCuGGAg -3'
miRNA:   3'- gUGUuGGACGGCG---ACGCGGGGGuCCU- -5'
5954 5' -61.9 NC_001806.1 + 124247 0.66 0.639286
Target:  5'- cCACAACauccGCgGCUucaucGCGCCCCuCGGGu -3'
miRNA:   3'- -GUGUUGga--CGgCGA-----CGCGGGG-GUCCu -5'
5954 5' -61.9 NC_001806.1 + 146687 0.66 0.639286
Target:  5'- cCGCAGgCUGCgGaaguccagGCGCCCaCUAGGGu -3'
miRNA:   3'- -GUGUUgGACGgCga------CGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 4721 0.66 0.629353
Target:  5'- gCGgGGCCUcCCGUUcGCGgCCCCGGGc -3'
miRNA:   3'- -GUgUUGGAcGGCGA-CGCgGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 2704 0.66 0.629353
Target:  5'- -----gCUGCCGCcGCcaGCCgCCCAGGGg -3'
miRNA:   3'- guguugGACGGCGaCG--CGG-GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 123935 0.66 0.629353
Target:  5'- aCugAACCgcccGCCcCUGCGCagauCCCAGGc -3'
miRNA:   3'- -GugUUGGa---CGGcGACGCGg---GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 6810 0.66 0.629353
Target:  5'- gCACGACCcGgagcgucccCUGCUGCGCUcuCCCGGGc -3'
miRNA:   3'- -GUGUUGGaC---------GGCGACGCGG--GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 37856 0.66 0.619422
Target:  5'- gCGCAcGCCccgUGuCCGCUG-GCCUCCGGGu -3'
miRNA:   3'- -GUGU-UGG---AC-GGCGACgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 65435 0.66 0.610491
Target:  5'- cCGCAACgaagggagcgggggaUGCCGCg--GCCCCCGGGu -3'
miRNA:   3'- -GUGUUGg--------------ACGGCGacgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 119927 0.66 0.6095
Target:  5'- --aGGCCUgcGCCGCagaacgcgucgUGCGCCCCCAc-- -3'
miRNA:   3'- gugUUGGA--CGGCG-----------ACGCGGGGGUccu -5'
5954 5' -61.9 NC_001806.1 + 24408 0.66 0.6095
Target:  5'- aCGC-GCC-GCCGCUGCGCCUgugCCGcGGc -3'
miRNA:   3'- -GUGuUGGaCGGCGACGCGGG---GGU-CCu -5'
5954 5' -61.9 NC_001806.1 + 22514 0.66 0.6095
Target:  5'- -cCAGCCUgcGCCGCgccuacGCGCCCCUguuGGc -3'
miRNA:   3'- guGUUGGA--CGGCGa-----CGCGGGGGu--CCu -5'
5954 5' -61.9 NC_001806.1 + 96534 0.66 0.608508
Target:  5'- gCGCcGCCcGCCcCUgGCGCCCCCccaacggGGGAc -3'
miRNA:   3'- -GUGuUGGaCGGcGA-CGCGGGGG-------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 1598 0.66 0.599594
Target:  5'- cCACGuACacggGCCGCagcgGCGCgCCCAGGc -3'
miRNA:   3'- -GUGU-UGga--CGGCGa---CGCGgGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 42228 0.66 0.599594
Target:  5'- --aAACCcgGCCGCcGCGgCCCCGcGGGc -3'
miRNA:   3'- gugUUGGa-CGGCGaCGCgGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 43491 0.66 0.599594
Target:  5'- cCACGAUCgacgggGCCGUgGCgGCCCaUCAGGAc -3'
miRNA:   3'- -GUGUUGGa-----CGGCGaCG-CGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 22099 0.66 0.599594
Target:  5'- gGCGGCCUgggcgacaGCCGCccGgGCCUCUGGGGg -3'
miRNA:   3'- gUGUUGGA--------CGGCGa-CgCGGGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.