miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 27136 0.71 0.364653
Target:  5'- gGCGGCCUGggucuuCCGCggaGCUCCCGGGAg -3'
miRNA:   3'- gUGUUGGAC------GGCGacgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 89522 0.7 0.372492
Target:  5'- gGCGGCgaGCUGCUGCGCggcgCCCCGGc- -3'
miRNA:   3'- gUGUUGgaCGGCGACGCG----GGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 23170 0.7 0.375659
Target:  5'- cCGCgGACCUGCUGUuugacaaccagagccUGCGCCCCCugcuGGc -3'
miRNA:   3'- -GUG-UUGGACGGCG---------------ACGCGGGGGu---CCu -5'
5954 5' -61.9 NC_001806.1 + 85957 0.7 0.380444
Target:  5'- aGCAGCUUGCgggGCUuggacGCGCCuCCCGGGGg -3'
miRNA:   3'- gUGUUGGACGg--CGA-----CGCGG-GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 3834 0.7 0.38851
Target:  5'- aGCGGCCgGCCGCcaugGCGUagCCCAGGu -3'
miRNA:   3'- gUGUUGGaCGGCGa---CGCGg-GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 106211 0.7 0.38851
Target:  5'- gCACAAUCcagccgccuccgUGuuGCUGCGUUCCCGGGc -3'
miRNA:   3'- -GUGUUGG------------ACggCGACGCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 1388 0.7 0.412524
Target:  5'- cCGCcGCCagcacggUGCCGCUGCGgCCCguGGc -3'
miRNA:   3'- -GUGuUGG-------ACGGCGACGCgGGGguCCu -5'
5954 5' -61.9 NC_001806.1 + 21885 0.7 0.413368
Target:  5'- cCGCGGCCUccgcggGCCGCaucgaGCGCCgCCGGGc -3'
miRNA:   3'- -GUGUUGGA------CGGCGa----CGCGGgGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 17540 0.7 0.413368
Target:  5'- gCACuagguCCUGUCGCUGC-CCCCCAa-- -3'
miRNA:   3'- -GUGuu---GGACGGCGACGcGGGGGUccu -5'
5954 5' -61.9 NC_001806.1 + 82791 0.69 0.421869
Target:  5'- --aGGCCaGCCGCUGCGUCCgcgaCAGGu -3'
miRNA:   3'- gugUUGGaCGGCGACGCGGGg---GUCCu -5'
5954 5' -61.9 NC_001806.1 + 41693 0.69 0.430475
Target:  5'- gGCGGCgUGCCGCccgccGUGUccuCCCCGGGAc -3'
miRNA:   3'- gUGUUGgACGGCGa----CGCG---GGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 3802 0.69 0.430475
Target:  5'- gGCGGCC-GCCGCgUGCGCcaggCCCCAGc- -3'
miRNA:   3'- gUGUUGGaCGGCG-ACGCG----GGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 54659 0.69 0.430475
Target:  5'- aACGGCCgacuuaGCCGCcgGUGaggggucguCCCCCAGGAa -3'
miRNA:   3'- gUGUUGGa-----CGGCGa-CGC---------GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 100781 0.69 0.430475
Target:  5'- gGCGGCCaGUCGCcGCGCCCCUcGcGAg -3'
miRNA:   3'- gUGUUGGaCGGCGaCGCGGGGGuC-CU- -5'
5954 5' -61.9 NC_001806.1 + 143652 0.69 0.44799
Target:  5'- gCGCcGCCccccGCCGCUaaaccccauccCGCCCCCGGGAc -3'
miRNA:   3'- -GUGuUGGa---CGGCGAc----------GCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 84921 0.69 0.456895
Target:  5'- aAgAGCCUGCCGCcucaCGCCCgcaaaCAGGAg -3'
miRNA:   3'- gUgUUGGACGGCGac--GCGGGg----GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 21486 0.69 0.456895
Target:  5'- aCGCAGCCgacGCCGCcgGCGaCCgggccccggCCCGGGGc -3'
miRNA:   3'- -GUGUUGGa--CGGCGa-CGC-GG---------GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 82193 0.69 0.464989
Target:  5'- uCACAuugguccGCuCUGgCGUaaucGCGCCCCCGGGGg -3'
miRNA:   3'- -GUGU-------UG-GACgGCGa---CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 141565 0.69 0.465893
Target:  5'- gGCAACCgugGCCGCUcauccGUGCC-UCGGGAu -3'
miRNA:   3'- gUGUUGGa--CGGCGA-----CGCGGgGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 96754 0.68 0.47407
Target:  5'- aGCAGCCgcGCCGCUGCccgacccGgCCCgAGGGu -3'
miRNA:   3'- gUGUUGGa-CGGCGACG-------CgGGGgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.