miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 120865 0.67 0.550529
Target:  5'- gGCGGCCccuggcGCCGcCUG-GuCCCCCGGGGa -3'
miRNA:   3'- gUGUUGGa-----CGGC-GACgC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 24092 0.67 0.550529
Target:  5'- gCACAggGCgUGCUGCUGCuGUCCaCgCGGGAc -3'
miRNA:   3'- -GUGU--UGgACGGCGACG-CGGG-G-GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 49265 0.68 0.531231
Target:  5'- gGCGACgaGCCGCccgUGCGCCgucgaCGGGAa -3'
miRNA:   3'- gUGUUGgaCGGCG---ACGCGGgg---GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 73195 0.68 0.531231
Target:  5'- --aGACUcGCCGCUcGCccgaGCCCCCGGGc -3'
miRNA:   3'- gugUUGGaCGGCGA-CG----CGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 91638 0.68 0.531231
Target:  5'- cCAC-GCCUGCguacacacgaCGCucaUGCGCCUCCGGGc -3'
miRNA:   3'- -GUGuUGGACG----------GCG---ACGCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 138791 0.68 0.531231
Target:  5'- aAUGGCCga-CGCagGCGCCCCCGGcGAg -3'
miRNA:   3'- gUGUUGGacgGCGa-CGCGGGGGUC-CU- -5'
5954 5' -61.9 NC_001806.1 + 29794 0.68 0.531231
Target:  5'- aCGCAGaggcGCCGCcGCGCCCCCcgugacgggcGGGGc -3'
miRNA:   3'- -GUGUUgga-CGGCGaCGCGGGGG----------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 86942 0.68 0.528356
Target:  5'- gGCGGCCUGCUGCUuguccaggagcacgGCcUCCUCGGGGc -3'
miRNA:   3'- gUGUUGGACGGCGA--------------CGcGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 103158 0.68 0.521673
Target:  5'- gGCAGCCgcUGUgCGCUGgGCCUgUAGGAc -3'
miRNA:   3'- gUGUUGG--ACG-GCGACgCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 113957 0.68 0.521673
Target:  5'- gACGGCCaGCUGCUGCaCaacaCCCAGGc -3'
miRNA:   3'- gUGUUGGaCGGCGACGcGg---GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 1441 0.68 0.521673
Target:  5'- gGCGgcGCCgGCgGCaGgGCCCCCGGGc -3'
miRNA:   3'- gUGU--UGGaCGgCGaCgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 150790 0.68 0.512183
Target:  5'- aGCGGCUUGgUGCggaGCUCCCGGGAg -3'
miRNA:   3'- gUGUUGGACgGCGacgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 77572 0.68 0.512183
Target:  5'- gCugGAUCgGCCGUU-CGCCCCCAGc- -3'
miRNA:   3'- -GugUUGGaCGGCGAcGCGGGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 121488 0.68 0.512183
Target:  5'- aGCGACCUgggGUCGCUcUGUCCaCCGGGAa -3'
miRNA:   3'- gUGUUGGA---CGGCGAcGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 3385 0.68 0.503703
Target:  5'- gACGGCCgccaggucGCCGUcgaagcccucggccaGCGCCUCCAGGAu -3'
miRNA:   3'- gUGUUGGa-------CGGCGa--------------CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 77394 0.68 0.502764
Target:  5'- gCGCGGCg-GCCGCgcccGCGCCCCUgcucguGGAu -3'
miRNA:   3'- -GUGUUGgaCGGCGa---CGCGGGGGu-----CCU- -5'
5954 5' -61.9 NC_001806.1 + 20159 0.68 0.474983
Target:  5'- cCGCccCCcGCCGCccggGCccGCCCCCGGGGc -3'
miRNA:   3'- -GUGuuGGaCGGCGa---CG--CGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 17154 0.68 0.474983
Target:  5'- cCGCuGCCgGUCGCUccaaggGCcCCCCCGGGAa -3'
miRNA:   3'- -GUGuUGGaCGGCGA------CGcGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 96754 0.68 0.47407
Target:  5'- aGCAGCCgcGCCGCUGCccgacccGgCCCgAGGGu -3'
miRNA:   3'- gUGUUGGa-CGGCGACG-------CgGGGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 141565 0.69 0.465893
Target:  5'- gGCAACCgugGCCGCUcauccGUGCC-UCGGGAu -3'
miRNA:   3'- gUGUUGGa--CGGCGA-----CGCGGgGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.