Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 28185 | 0.67 | 0.846796 |
Target: 5'- gGGGCCG-GGC-GCCAUGUcugggGCGCCAu -3' miRNA: 3'- gUCCGGCuUUGcCGGUACG-----UGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 9160 | 0.67 | 0.846796 |
Target: 5'- aGGGCCaucgggGAgacAACGGCCGUGUAgcCCGGg -3' miRNA: 3'- gUCCGG------CU---UUGCCGGUACGUguGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 3447 | 0.67 | 0.846796 |
Target: 5'- cCAGGCaCucGACGGCCAcGCG-GCCGGc -3' miRNA: 3'- -GUCCG-GcuUUGCCGGUaCGUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 71341 | 0.67 | 0.846796 |
Target: 5'- gAGGCCuauGGGcACGGCC---CACGCCAGg -3' miRNA: 3'- gUCCGG---CUU-UGCCGGuacGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 1641 | 0.67 | 0.837844 |
Target: 5'- gCAGGCggcgugCGAGugGGCCuccuccucgcagaAguccgGCGCGCCGGg -3' miRNA: 3'- -GUCCG------GCUUugCCGG-------------Ua----CGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 22176 | 0.67 | 0.83035 |
Target: 5'- gGGcGCCccGGCGGCCGUGUggGCGCCc- -3' miRNA: 3'- gUC-CGGcuUUGCCGGUACG--UGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 75996 | 0.67 | 0.83035 |
Target: 5'- gGGGCC---GCGGCCGacacGUACGCCGa -3' miRNA: 3'- gUCCGGcuuUGCCGGUa---CGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 128516 | 0.67 | 0.83035 |
Target: 5'- -uGGCgugCGgcAUGGCCAUGCGgGCCGc -3' miRNA: 3'- guCCG---GCuuUGCCGGUACGUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 132357 | 0.67 | 0.83035 |
Target: 5'- uGGGCCu--GCGGCCAcGCggGCACCc- -3' miRNA: 3'- gUCCGGcuuUGCCGGUaCG--UGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24551 | 0.67 | 0.83035 |
Target: 5'- uCGGGgaccaCCGAcgccAugGcGCCcgGCGCGCCGGa -3' miRNA: 3'- -GUCC-----GGCU----UugC-CGGuaCGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 131590 | 0.67 | 0.813176 |
Target: 5'- cCGGGCC----CGGCCAgGCACGgCAGc -3' miRNA: 3'- -GUCCGGcuuuGCCGGUaCGUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 146195 | 0.67 | 0.813176 |
Target: 5'- cCGGGCC---GCGGCUcUGUgguuaACACCAGa -3' miRNA: 3'- -GUCCGGcuuUGCCGGuACG-----UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 27261 | 0.67 | 0.813176 |
Target: 5'- gGGGgCGGGACuGGCCAaucgGCGgcCGCCAGc -3' miRNA: 3'- gUCCgGCUUUG-CCGGUa---CGU--GUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 3183 | 0.67 | 0.813176 |
Target: 5'- -cGGCCacGGCGGCCucgcUGC-CGCCGGc -3' miRNA: 3'- guCCGGcuUUGCCGGu---ACGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 92920 | 0.68 | 0.804336 |
Target: 5'- gCAGGgCGggGCgGGCC-UGgAgGCCGGg -3' miRNA: 3'- -GUCCgGCuuUG-CCGGuACgUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 67793 | 0.68 | 0.804336 |
Target: 5'- -uGGCCGAc-UGGCCcgGCGCGuCCGu -3' miRNA: 3'- guCCGGCUuuGCCGGuaCGUGU-GGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151569 | 0.68 | 0.804336 |
Target: 5'- gGGGCCGcgauGGCGGCgGcgGCGgGCCAu -3' miRNA: 3'- gUCCGGCu---UUGCCGgUa-CGUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151691 | 0.68 | 0.804336 |
Target: 5'- -cGGCCGggGgGGCCcgggcUGCcCGCCGc -3' miRNA: 3'- guCCGGCuuUgCCGGu----ACGuGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 133469 | 0.68 | 0.804336 |
Target: 5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3' miRNA: 3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 150864 | 0.68 | 0.804336 |
Target: 5'- --cGCCGGGcCGGCUccGCGgGCCAGg -3' miRNA: 3'- gucCGGCUUuGCCGGuaCGUgUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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