miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 4822 0.66 0.869976
Target:  5'- gGGGuCCGggGCGGCgAgGC-CGCgGGg -3'
miRNA:   3'- gUCC-GGCuuUGCCGgUaCGuGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 6794 0.71 0.637404
Target:  5'- -cGGCCaGAACcGCCGUGCACGacCCGGa -3'
miRNA:   3'- guCCGGcUUUGcCGGUACGUGU--GGUC- -5'
5956 3' -56.4 NC_001806.1 + 9160 0.67 0.846796
Target:  5'- aGGGCCaucgggGAgacAACGGCCGUGUAgcCCGGg -3'
miRNA:   3'- gUCCGG------CU---UUGCCGGUACGUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 10504 0.76 0.339557
Target:  5'- gGGGUCGGAACuggGGCCGguUGCAcCACCAGg -3'
miRNA:   3'- gUCCGGCUUUG---CCGGU--ACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 10699 0.68 0.757955
Target:  5'- gGGGCCGggGgGGC---GUACGCCAu -3'
miRNA:   3'- gUCCGGCuuUgCCGguaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 10727 0.74 0.458528
Target:  5'- gCGGGaCCGGAGC-GCgCAUGCACGCCGc -3'
miRNA:   3'- -GUCC-GGCUUUGcCG-GUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 11930 0.71 0.586121
Target:  5'- aUAGGCCGA----GCCGuUGUACGCCAGa -3'
miRNA:   3'- -GUCCGGCUuugcCGGU-ACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 13605 0.66 0.869976
Target:  5'- gGGGCUGGAACgGGUCcgGUAgGCCc- -3'
miRNA:   3'- gUCCGGCUUUG-CCGGuaCGUgUGGuc -5'
5956 3' -56.4 NC_001806.1 + 20187 0.68 0.79534
Target:  5'- gGGGCCGgcGCGGaguCggGCACggcGCCAGu -3'
miRNA:   3'- gUCCGGCuuUGCCg--GuaCGUG---UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 20411 0.77 0.309937
Target:  5'- gGGGCCcgGGGACGGCCAacggGCGCGCgGGg -3'
miRNA:   3'- gUCCGG--CUUUGCCGGUa---CGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 21622 0.68 0.776909
Target:  5'- -cGGCCGGuGGCGGCCAUcgGCGuCAUCGa -3'
miRNA:   3'- guCCGGCU-UUGCCGGUA--CGU-GUGGUc -5'
5956 3' -56.4 NC_001806.1 + 22176 0.67 0.83035
Target:  5'- gGGcGCCccGGCGGCCGUGUggGCGCCc- -3'
miRNA:   3'- gUC-CGGcuUUGCCGGUACG--UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 22884 0.68 0.757955
Target:  5'- gGGGCUGGccGgGGCCcgGCcCGCCAGc -3'
miRNA:   3'- gUCCGGCUu-UgCCGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 23067 0.77 0.317154
Target:  5'- gAGGCCGccguGGCcGCCGUGCGCGCCGu -3'
miRNA:   3'- gUCCGGCu---UUGcCGGUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 23212 0.77 0.295881
Target:  5'- -uGGCgGcgGCGGCCA-GCGCACCGGa -3'
miRNA:   3'- guCCGgCuuUGCCGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 23468 0.69 0.732655
Target:  5'- cCGGGCCGccgcggcgcAGGCccgcccgcgccccguGGCCGUGuCGCGCCGGc -3'
miRNA:   3'- -GUCCGGC---------UUUG---------------CCGGUAC-GUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 23806 0.68 0.79534
Target:  5'- gGGGCCGccucuuUGGCCcccUGCGCGCCu- -3'
miRNA:   3'- gUCCGGCuuu---GCCGGu--ACGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 24012 0.69 0.718776
Target:  5'- -uGGCC-AAcCGGCUGUGCGgGCCGGa -3'
miRNA:   3'- guCCGGcUUuGCCGGUACGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 24551 0.67 0.83035
Target:  5'- uCGGGgaccaCCGAcgccAugGcGCCcgGCGCGCCGGa -3'
miRNA:   3'- -GUCC-----GGCU----UugC-CGGuaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 24673 0.73 0.525743
Target:  5'- gGGGCgCGAGGCGGU---GCGCGCCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGguaCGUGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.