miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 1463 0.67 0.854728
Target:  5'- cCGGGCCGucguCGucGCCGcGCAgCACCAGc -3'
miRNA:   3'- -GUCCGGCuuu-GC--CGGUaCGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1560 0.7 0.657943
Target:  5'- cCGGGCCGGGcCGGC---GCGCACCGc -3'
miRNA:   3'- -GUCCGGCUUuGCCGguaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 1606 0.7 0.657943
Target:  5'- aCGGGCCGcAGCGGC---GCGC-CCAGg -3'
miRNA:   3'- -GUCCGGCuUUGCCGguaCGUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1641 0.67 0.837844
Target:  5'- gCAGGCggcgugCGAGugGGCCuccuccucgcagaAguccgGCGCGCCGGg -3'
miRNA:   3'- -GUCCG------GCUUugCCGG-------------Ua----CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1714 0.69 0.738552
Target:  5'- gAGGCCGccgccCGGCCGUccaGCGCCGGc -3'
miRNA:   3'- gUCCGGCuuu--GCCGGUAcg-UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1790 0.75 0.422235
Target:  5'- cCGGGCCGAAGCG--CGUGCGCACgCGGu -3'
miRNA:   3'- -GUCCGGCUUUGCcgGUACGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 1904 0.75 0.404747
Target:  5'- cCGGGCCGAAcacGCGGCCcgagGCcaGCACCGu -3'
miRNA:   3'- -GUCCGGCUU---UGCCGGua--CG--UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 2221 0.66 0.869976
Target:  5'- -cGGCCGugucCGGCCc-GCACAgCCGGu -3'
miRNA:   3'- guCCGGCuuu-GCCGGuaCGUGU-GGUC- -5'
5956 3' -56.4 NC_001806.1 + 2402 0.66 0.869976
Target:  5'- cCAGGCCGccauGCGGCgCA-GCGgGCCc- -3'
miRNA:   3'- -GUCCGGCuu--UGCCG-GUaCGUgUGGuc -5'
5956 3' -56.4 NC_001806.1 + 2521 0.76 0.371177
Target:  5'- -cGGCgGggGCgGGCCcgGCGCACCGc -3'
miRNA:   3'- guCCGgCuuUG-CCGGuaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 2742 0.68 0.776909
Target:  5'- gCGGGCCGGcgcgacACGGCCAcgGgGCGCgGGc -3'
miRNA:   3'- -GUCCGGCUu-----UGCCGGUa-CgUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 2783 0.69 0.728706
Target:  5'- --cGCCGcgGCGGCCcgGgGCGCCGc -3'
miRNA:   3'- gucCGGCuuUGCCGGuaCgUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 2926 0.71 0.627124
Target:  5'- gCGGGCCGccgccuccGGGCGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGC--------UUUGCCGGuaC-GUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3183 0.67 0.813176
Target:  5'- -cGGCCacGGCGGCCucgcUGC-CGCCGGc -3'
miRNA:   3'- guCCGGcuUUGCCGGu---ACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3359 0.72 0.545649
Target:  5'- gCGGGCCGGGcccCGGCCAgccccgggacgGC-CGCCAGg -3'
miRNA:   3'- -GUCCGGCUUu--GCCGGUa----------CGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3447 0.67 0.846796
Target:  5'- cCAGGCaCucGACGGCCAcGCG-GCCGGc -3'
miRNA:   3'- -GUCCG-GcuUUGCCGGUaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3819 0.73 0.496421
Target:  5'- cCAGGCCccagccGAAGCGGCCG-GC-CGCCAu -3'
miRNA:   3'- -GUCCGG------CUUUGCCGGUaCGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 4137 0.68 0.776909
Target:  5'- gAGGCCcGGGCGGCUGU-CGC-CCAGg -3'
miRNA:   3'- gUCCGGcUUUGCCGGUAcGUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4666 0.66 0.867742
Target:  5'- uGGGCCGGcgggcgcggcgacaGGCGGuCCGUGgGguCCGGa -3'
miRNA:   3'- gUCCGGCU--------------UUGCC-GGUACgUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4743 0.66 0.862457
Target:  5'- cCGGGCCGG---GGCCcgGU-CGCCGGc -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCGuGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.