miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 40863 0.81 0.181768
Target:  5'- gGGGCgGGGACGGgCAUGCACACCc- -3'
miRNA:   3'- gUCCGgCUUUGCCgGUACGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 51790 0.81 0.181768
Target:  5'- gGGGCCGugGCGGCCAaGUACGCCGc -3'
miRNA:   3'- gUCCGGCuuUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 23212 0.77 0.295881
Target:  5'- -uGGCgGcgGCGGCCA-GCGCACCGGa -3'
miRNA:   3'- guCCGgCuuUGCCGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 20411 0.77 0.309937
Target:  5'- gGGGCCcgGGGACGGCCAacggGCGCGCgGGg -3'
miRNA:   3'- gUCCGG--CUUUGCCGGUa---CGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 23067 0.77 0.317154
Target:  5'- gAGGCCGccguGGCcGCCGUGCGCGCCGu -3'
miRNA:   3'- gUCCGGCu---UUGcCGGUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 10504 0.76 0.339557
Target:  5'- gGGGUCGGAACuggGGCCGguUGCAcCACCAGg -3'
miRNA:   3'- gUCCGGCUUUG---CCGGU--ACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 73454 0.76 0.355119
Target:  5'- cCAGGCCGGggUGGCCGgcccgGC-CGCCGc -3'
miRNA:   3'- -GUCCGGCUuuGCCGGUa----CGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 73940 0.76 0.355119
Target:  5'- gGGGUCGAcGCGGUCucacaGCACGCCGGg -3'
miRNA:   3'- gUCCGGCUuUGCCGGua---CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 89791 0.76 0.363087
Target:  5'- gGGGCUGggGCGGaCCG-GCACGCCc- -3'
miRNA:   3'- gUCCGGCuuUGCC-GGUaCGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 62838 0.76 0.371177
Target:  5'- --cGCCGAGGCGGCgGUGgGCAUCAGc -3'
miRNA:   3'- gucCGGCUUUGCCGgUACgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 50667 0.76 0.371177
Target:  5'- cCGGcGCCGGgacgacgcGGCGGCCAcGCGCGCCAu -3'
miRNA:   3'- -GUC-CGGCU--------UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 2521 0.76 0.371177
Target:  5'- -cGGCgGggGCgGGCCcgGCGCACCGc -3'
miRNA:   3'- guCCGgCuuUG-CCGGuaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 27034 0.75 0.37939
Target:  5'- gAGGCCGAGGCGGUCAU-CGgGCCGu -3'
miRNA:   3'- gUCCGGCUUUGCCGGUAcGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 131866 0.75 0.387723
Target:  5'- cCAGGCCGucguGGCGGCCGccCGCGCCGc -3'
miRNA:   3'- -GUCCGGCu---UUGCCGGUacGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 1904 0.75 0.404747
Target:  5'- cCGGGCCGAAcacGCGGCCcgagGCcaGCACCGu -3'
miRNA:   3'- -GUCCGGCUU---UGCCGGua--CG--UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 102507 0.75 0.404747
Target:  5'- -cGGucCCGAucaccGCGGCCAgGCACGCCAGg -3'
miRNA:   3'- guCC--GGCUu----UGCCGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1790 0.75 0.422235
Target:  5'- cCGGGCCGAAGCG--CGUGCGCACgCGGu -3'
miRNA:   3'- -GUCCGGCUUUGCcgGUACGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 63131 0.74 0.431147
Target:  5'- gCAGGCCGuguGCaGGCCcUGCAUGCCGa -3'
miRNA:   3'- -GUCCGGCuu-UG-CCGGuACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 46435 0.74 0.431147
Target:  5'- -cGGUCGGgcgccuGGCGGCCAUGCAUGCcCGGa -3'
miRNA:   3'- guCCGGCU------UUGCCGGUACGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 141418 0.74 0.440169
Target:  5'- cCAGGCCGggGCGGC---GCGCgGCCAa -3'
miRNA:   3'- -GUCCGGCuuUGCCGguaCGUG-UGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.