miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 3' -50.4 NC_001806.1 + 23145 0.81 0.426389
Target:  5'- --cUGCCGAGCUCCGCGGCcgccgccgccGCGGa -3'
miRNA:   3'- cuaAUGGCUCGAGGCGUUGaaa-------CGCC- -5'
5957 3' -50.4 NC_001806.1 + 66389 0.81 0.456452
Target:  5'- --aUGCCGAGCUCUGCAAag--GCGGc -3'
miRNA:   3'- cuaAUGGCUCGAGGCGUUgaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 54366 0.74 0.803692
Target:  5'- ---cGCCGAugacGCUgCCGCGACUgugaugUGCGGa -3'
miRNA:   3'- cuaaUGGCU----CGA-GGCGUUGAa-----ACGCC- -5'
5957 3' -50.4 NC_001806.1 + 132157 0.72 0.878947
Target:  5'- cGUUGCCGAGCaUCC-CGACgc-GCGGc -3'
miRNA:   3'- cUAAUGGCUCG-AGGcGUUGaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 51277 0.72 0.906538
Target:  5'- ---gGCgCGAGCUCCcuGCGGCUggcGCGGu -3'
miRNA:   3'- cuaaUG-GCUCGAGG--CGUUGAaa-CGCC- -5'
5957 3' -50.4 NC_001806.1 + 49643 0.71 0.918828
Target:  5'- cGcgUGCCGGGC-CCGgAGCUccggGCGGc -3'
miRNA:   3'- -CuaAUGGCUCGaGGCgUUGAaa--CGCC- -5'
5957 3' -50.4 NC_001806.1 + 19072 0.71 0.924589
Target:  5'- ---cACCGAGCgCCGUAGCaUUGCa- -3'
miRNA:   3'- cuaaUGGCUCGaGGCGUUGaAACGcc -5'
5957 3' -50.4 NC_001806.1 + 129637 0.71 0.930091
Target:  5'- uGGggACCGAGCUCCuGCAgGCUgcccUGCGc -3'
miRNA:   3'- -CUaaUGGCUCGAGG-CGU-UGAa---ACGCc -5'
5957 3' -50.4 NC_001806.1 + 14032 0.71 0.935336
Target:  5'- ---gGCCGGGCUaCCGCGAuCUuuaUUGgGGg -3'
miRNA:   3'- cuaaUGGCUCGA-GGCGUU-GA---AACgCC- -5'
5957 3' -50.4 NC_001806.1 + 76037 0.7 0.945056
Target:  5'- ---cACCGAGCcCCuggcGCGGCUUcUGCGGc -3'
miRNA:   3'- cuaaUGGCUCGaGG----CGUUGAA-ACGCC- -5'
5957 3' -50.4 NC_001806.1 + 150667 0.7 0.945056
Target:  5'- ---gGCCGGGCcCCGCcGCgcugGCGGc -3'
miRNA:   3'- cuaaUGGCUCGaGGCGuUGaaa-CGCC- -5'
5957 3' -50.4 NC_001806.1 + 98541 0.7 0.953766
Target:  5'- ---cGCCGAcGCcaacgCCGcCAugUUUGCGGg -3'
miRNA:   3'- cuaaUGGCU-CGa----GGC-GUugAAACGCC- -5'
5957 3' -50.4 NC_001806.1 + 36475 0.69 0.961492
Target:  5'- aGUUGCgGAGCUCgGUAAUca-GCGGa -3'
miRNA:   3'- cUAAUGgCUCGAGgCGUUGaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 52469 0.69 0.974161
Target:  5'- ---gGCCGcggaucuGCUCCGCAACgggGCGc -3'
miRNA:   3'- cuaaUGGCu------CGAGGCGUUGaaaCGCc -5'
5957 3' -50.4 NC_001806.1 + 117885 0.69 0.974161
Target:  5'- cGGggGCCGAGC-CCGUgAGCgc-GCGGa -3'
miRNA:   3'- -CUaaUGGCUCGaGGCG-UUGaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 72404 0.68 0.976787
Target:  5'- uGAcgGCCGcGGCUCUGCAuCUUUaCGGg -3'
miRNA:   3'- -CUaaUGGC-UCGAGGCGUuGAAAcGCC- -5'
5957 3' -50.4 NC_001806.1 + 21175 0.68 0.976787
Target:  5'- ----cCCGAGCccagaCCGCGACga-GCGGg -3'
miRNA:   3'- cuaauGGCUCGa----GGCGUUGaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 150634 0.68 0.979211
Target:  5'- ---gGCCGGGCcCCGaaGACUcgGCGGa -3'
miRNA:   3'- cuaaUGGCUCGaGGCg-UUGAaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 21914 0.68 0.981442
Target:  5'- ---cGCCGGGC-CCGCG-Cg--GCGGu -3'
miRNA:   3'- cuaaUGGCUCGaGGCGUuGaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 58078 0.68 0.983489
Target:  5'- ---gGCCGAGCUCC-CGGCUgaa-GGa -3'
miRNA:   3'- cuaaUGGCUCGAGGcGUUGAaacgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.