Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5957 | 3' | -50.4 | NC_001806.1 | + | 2946 | 0.66 | 0.99432 |
Target: 5'- ---gGCCGGGCcgggCCGgGACUcUUGCGc -3' miRNA: 3'- cuaaUGGCUCGa---GGCgUUGA-AACGCc -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 3260 | 0.67 | 0.986403 |
Target: 5'- ---aACCGcAGCUCgCGCAGCcacgcgcgcagGCGGg -3' miRNA: 3'- cuaaUGGC-UCGAG-GCGUUGaaa--------CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 14032 | 0.71 | 0.935336 |
Target: 5'- ---gGCCGGGCUaCCGCGAuCUuuaUUGgGGg -3' miRNA: 3'- cuaaUGGCUCGA-GGCGUU-GA---AACgCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 16161 | 0.66 | 0.995119 |
Target: 5'- --cUGCCGGGagaCCGCuGCgaucUGCGGg -3' miRNA: 3'- cuaAUGGCUCga-GGCGuUGaa--ACGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 19072 | 0.71 | 0.924589 |
Target: 5'- ---cACCGAGCgCCGUAGCaUUGCa- -3' miRNA: 3'- cuaaUGGCUCGaGGCGUUGaAACGcc -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 21175 | 0.68 | 0.976787 |
Target: 5'- ----cCCGAGCccagaCCGCGACga-GCGGg -3' miRNA: 3'- cuaauGGCUCGa----GGCGUUGaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 21914 | 0.68 | 0.981442 |
Target: 5'- ---cGCCGGGC-CCGCG-Cg--GCGGu -3' miRNA: 3'- cuaaUGGCUCGaGGCGUuGaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 23145 | 0.81 | 0.426389 |
Target: 5'- --cUGCCGAGCUCCGCGGCcgccgccgccGCGGa -3' miRNA: 3'- cuaAUGGCUCGAGGCGUUGaaa-------CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 33742 | 0.67 | 0.990013 |
Target: 5'- ---cGCCG-GCUCUGCggUgucgGCGGc -3' miRNA: 3'- cuaaUGGCuCGAGGCGuuGaaa-CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 36475 | 0.69 | 0.961492 |
Target: 5'- aGUUGCgGAGCUCgGUAAUca-GCGGa -3' miRNA: 3'- cUAAUGgCUCGAGgCGUUGaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 49643 | 0.71 | 0.918828 |
Target: 5'- cGcgUGCCGGGC-CCGgAGCUccggGCGGc -3' miRNA: 3'- -CuaAUGGCUCGaGGCgUUGAaa--CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 50160 | 0.66 | 0.995119 |
Target: 5'- ---cGCCGcgguGUUCCGCAGCUcgcUGgGGu -3' miRNA: 3'- cuaaUGGCu---CGAGGCGUUGAa--ACgCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 50709 | 0.67 | 0.988613 |
Target: 5'- ---cGCCGGGCUCguccUGCAGCggcUGCuGGg -3' miRNA: 3'- cuaaUGGCUCGAG----GCGUUGaa-ACG-CC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 51277 | 0.72 | 0.906538 |
Target: 5'- ---gGCgCGAGCUCCcuGCGGCUggcGCGGu -3' miRNA: 3'- cuaaUG-GCUCGAGG--CGUUGAaa-CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 51345 | 0.67 | 0.990013 |
Target: 5'- cGUUcCCGAGCggCGCAuCUUcgGCGGg -3' miRNA: 3'- cUAAuGGCUCGagGCGUuGAAa-CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 52469 | 0.69 | 0.974161 |
Target: 5'- ---gGCCGcggaucuGCUCCGCAACgggGCGc -3' miRNA: 3'- cuaaUGGCu------CGAGGCGUUGaaaCGCc -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 54366 | 0.74 | 0.803692 |
Target: 5'- ---cGCCGAugacGCUgCCGCGACUgugaugUGCGGa -3' miRNA: 3'- cuaaUGGCU----CGA-GGCGUUGAa-----ACGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 58078 | 0.68 | 0.983489 |
Target: 5'- ---gGCCGAGCUCC-CGGCUgaa-GGa -3' miRNA: 3'- cuaaUGGCUCGAGGcGUUGAaacgCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 66389 | 0.81 | 0.456452 |
Target: 5'- --aUGCCGAGCUCUGCAAag--GCGGc -3' miRNA: 3'- cuaAUGGCUCGAGGCGUUgaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 72404 | 0.68 | 0.976787 |
Target: 5'- uGAcgGCCGcGGCUCUGCAuCUUUaCGGg -3' miRNA: 3'- -CUaaUGGC-UCGAGGCGUuGAAAcGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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