Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5957 | 3' | -50.4 | NC_001806.1 | + | 150799 | 0.67 | 0.988613 |
Target: 5'- --gUGCgGAGCUCCcgGgAGCUccGCGGa -3' miRNA: 3'- cuaAUGgCUCGAGG--CgUUGAaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 150667 | 0.7 | 0.945056 |
Target: 5'- ---gGCCGGGCcCCGCcGCgcugGCGGc -3' miRNA: 3'- cuaaUGGCUCGaGGCGuUGaaa-CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 150634 | 0.68 | 0.979211 |
Target: 5'- ---gGCCGGGCcCCGaaGACUcgGCGGa -3' miRNA: 3'- cuaaUGGCUCGaGGCg-UUGAaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 148005 | 0.67 | 0.992407 |
Target: 5'- ---cGCCGcGGCU-CGCGACUg-GCGGg -3' miRNA: 3'- cuaaUGGC-UCGAgGCGUUGAaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 146675 | 0.68 | 0.985361 |
Target: 5'- cGggUGCCGAGa-CCGCAGgc-UGCGGa -3' miRNA: 3'- -CuaAUGGCUCgaGGCGUUgaaACGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 143127 | 0.66 | 0.995824 |
Target: 5'- --cUGCCGGGaggggCCGCGGauggGCGGg -3' miRNA: 3'- cuaAUGGCUCga---GGCGUUgaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 136369 | 0.66 | 0.993419 |
Target: 5'- ---gGCCGGcgcGCUCCGCGGCcuccGCGa -3' miRNA: 3'- cuaaUGGCU---CGAGGCGUUGaaa-CGCc -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 132157 | 0.72 | 0.878947 |
Target: 5'- cGUUGCCGAGCaUCC-CGACgc-GCGGc -3' miRNA: 3'- cUAAUGGCUCG-AGGcGUUGaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 129637 | 0.71 | 0.930091 |
Target: 5'- uGGggACCGAGCUCCuGCAgGCUgcccUGCGc -3' miRNA: 3'- -CUaaUGGCUCGAGG-CGU-UGAa---ACGCc -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 122230 | 0.66 | 0.995824 |
Target: 5'- ---cACCG-GCUCgGUcGCcUUGCGGa -3' miRNA: 3'- cuaaUGGCuCGAGgCGuUGaAACGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 117885 | 0.69 | 0.974161 |
Target: 5'- cGGggGCCGAGC-CCGUgAGCgc-GCGGa -3' miRNA: 3'- -CUaaUGGCUCGaGGCG-UUGaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 115854 | 0.67 | 0.992513 |
Target: 5'- cGAggGCCGGGCcccauaaaacccaagCCGgGACUccGCGGa -3' miRNA: 3'- -CUaaUGGCUCGa--------------GGCgUUGAaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 113747 | 0.67 | 0.990013 |
Target: 5'- ---gACCG-GC-CCGgAGCUggGCGGg -3' miRNA: 3'- cuaaUGGCuCGaGGCgUUGAaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 105163 | 0.66 | 0.993419 |
Target: 5'- aGggUGCCGAGCcCCagaGCAAC---GCGGg -3' miRNA: 3'- -CuaAUGGCUCGaGG---CGUUGaaaCGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 103928 | 0.67 | 0.988613 |
Target: 5'- ---aGCCGGGUcaCGCGGCUgacGCGGa -3' miRNA: 3'- cuaaUGGCUCGagGCGUUGAaa-CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 98541 | 0.7 | 0.953766 |
Target: 5'- ---cGCCGAcGCcaacgCCGcCAugUUUGCGGg -3' miRNA: 3'- cuaaUGGCU-CGa----GGC-GUugAAACGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 89267 | 0.67 | 0.990013 |
Target: 5'- ---gGCUG-GCUCCGCGAgggccgGCGGg -3' miRNA: 3'- cuaaUGGCuCGAGGCGUUgaaa--CGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 84157 | 0.67 | 0.992407 |
Target: 5'- ---cGCgCGAcgugGCUCCGCG-CUUUGCGc -3' miRNA: 3'- cuaaUG-GCU----CGAGGCGUuGAAACGCc -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 81958 | 0.66 | 0.996443 |
Target: 5'- ---cGCCGGGUUCgGCGGCga--CGGg -3' miRNA: 3'- cuaaUGGCUCGAGgCGUUGaaacGCC- -5' |
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5957 | 3' | -50.4 | NC_001806.1 | + | 76037 | 0.7 | 0.945056 |
Target: 5'- ---cACCGAGCcCCuggcGCGGCUUcUGCGGc -3' miRNA: 3'- cuaaUGGCUCGaGG----CGUUGAA-ACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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