miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 5' -58.9 NC_001806.1 + 94646 0.68 0.68011
Target:  5'- cGAUCGCCCGCCG--CCUG-GCGGACc -3'
miRNA:   3'- -UUGGUGGGCGGCcaGGAUgCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 135005 0.68 0.670103
Target:  5'- uGCC-CCCGCCcuGGUCCgGCGCGccucGCg -3'
miRNA:   3'- uUGGuGGGCGG--CCAGGaUGCGCu---UGa -5'
5957 5' -58.9 NC_001806.1 + 23027 0.68 0.670103
Target:  5'- cAugCGCCUGCgCGGggaCCUGCGCGuGGCc -3'
miRNA:   3'- -UugGUGGGCG-GCCa--GGAUGCGC-UUGa -5'
5957 5' -58.9 NC_001806.1 + 144153 0.68 0.670103
Target:  5'- -uCCACCCGCCGG-CCggcuaccgagAC-CGAACa -3'
miRNA:   3'- uuGGUGGGCGGCCaGGa---------UGcGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 5861 0.68 0.668097
Target:  5'- -cCCGCCCGCCGGacgCCgggaccaacgggACGgCGGGCg -3'
miRNA:   3'- uuGGUGGGCGGCCa--GGa-----------UGC-GCUUGa -5'
5957 5' -58.9 NC_001806.1 + 48040 0.68 0.660066
Target:  5'- uAACCuCCCGCUGGUgCgcaGCGCG-GCUa -3'
miRNA:   3'- -UUGGuGGGCGGCCAgGa--UGCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 96634 0.68 0.660066
Target:  5'- cGACCGuCgCCGCgGGccacgccacCCUGCGCGAGCa -3'
miRNA:   3'- -UUGGU-G-GGCGgCCa--------GGAUGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 125691 0.68 0.660066
Target:  5'- cGCCACCUGCgCGGguugCUGCGCGGc-- -3'
miRNA:   3'- uUGGUGGGCG-GCCag--GAUGCGCUuga -5'
5957 5' -58.9 NC_001806.1 + 26957 0.68 0.651013
Target:  5'- cGGCCGCCCGCCuGGcgcgCCgcggcucgugggccCGCGAGCg -3'
miRNA:   3'- -UUGGUGGGCGG-CCa---GGau------------GCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 92663 0.68 0.650007
Target:  5'- cAACCAgcuuCCCGcCCGGcUCCUgucGCGCGAGg- -3'
miRNA:   3'- -UUGGU----GGGC-GGCC-AGGA---UGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 123235 0.69 0.619779
Target:  5'- uGCCGCCCaCgCGGcCCUGCGCcGACg -3'
miRNA:   3'- uUGGUGGGcG-GCCaGGAUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 50874 0.69 0.609711
Target:  5'- cACC-CCCGCCaaGUUCUGgGCGGACUc -3'
miRNA:   3'- uUGGuGGGCGGc-CAGGAUgCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 63788 0.69 0.609711
Target:  5'- cACgCACgCGCCGGUCggACGCGcGCUc -3'
miRNA:   3'- uUG-GUGgGCGGCCAGgaUGCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 22972 0.69 0.59966
Target:  5'- -cCCGCCUGCgCGcGUggCUGCGCGAGCUg -3'
miRNA:   3'- uuGGUGGGCG-GC-CAg-GAUGCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 47988 0.69 0.598656
Target:  5'- uGCCaaucgagGCCCGCCGG--CUGCGgGAGCUa -3'
miRNA:   3'- uUGG-------UGGGCGGCCagGAUGCgCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 28143 0.69 0.586629
Target:  5'- cGAgUACCCGCCGG-CCUgagggccgcccccaGCGCGAGgUg -3'
miRNA:   3'- -UUgGUGGGCGGCCaGGA--------------UGCGCUUgA- -5'
5957 5' -58.9 NC_001806.1 + 102434 0.7 0.569672
Target:  5'- cGGCC-CCCGCCGG-CC---GCGAACUg -3'
miRNA:   3'- -UUGGuGGGCGGCCaGGaugCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 107034 0.7 0.569672
Target:  5'- uGGCCGCCCGCgGGgc---CGCGGGCUg -3'
miRNA:   3'- -UUGGUGGGCGgCCaggauGCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 115979 0.7 0.569672
Target:  5'- -cCCACCC-CCcGUCCUAUGCGAGg- -3'
miRNA:   3'- uuGGUGGGcGGcCAGGAUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 351 0.7 0.559753
Target:  5'- cGCCGCCCGCCuuUUUUGCGCGcGCg -3'
miRNA:   3'- uUGGUGGGCGGccAGGAUGCGCuUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.