miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 5' -58.9 NC_001806.1 + 2320 0.67 0.7294
Target:  5'- cGCCGCCgGCCaGGUCCU-CGCccGGCa -3'
miRNA:   3'- uUGGUGGgCGG-CCAGGAuGCGc-UUGa -5'
5957 5' -58.9 NC_001806.1 + 94739 0.67 0.7294
Target:  5'- -cCCACgCCGCCGGgcugucggacgCCgaccgcGCGCGGGCg -3'
miRNA:   3'- uuGGUG-GGCGGCCa----------GGa-----UGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 116198 0.67 0.7294
Target:  5'- cGACCAUCCGCCGGcaaCUgACGCuGGCc -3'
miRNA:   3'- -UUGGUGGGCGGCCag-GA-UGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 100116 0.67 0.71967
Target:  5'- uGACCGCCCGCCuggcGGUCC---GCG-GCUa -3'
miRNA:   3'- -UUGGUGGGCGG----CCAGGaugCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 44106 0.67 0.71967
Target:  5'- gAACCaaaACCC-CCGGUCCcGCGCucGCUc -3'
miRNA:   3'- -UUGG---UGGGcGGCCAGGaUGCGcuUGA- -5'
5957 5' -58.9 NC_001806.1 + 2068 0.67 0.71967
Target:  5'- uGACCACgaugagCCGCCGGUCgCcgGCgcugGCGAGCa -3'
miRNA:   3'- -UUGGUG------GGCGGCCAG-Ga-UG----CGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 58341 0.67 0.709867
Target:  5'- cGGCCGCCUgGCCcG-CCUugGUGAGCg -3'
miRNA:   3'- -UUGGUGGG-CGGcCaGGAugCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 3459 0.67 0.709867
Target:  5'- cGGCCACgCgGCCGG-CCUGgGCGcGGCg -3'
miRNA:   3'- -UUGGUG-GgCGGCCaGGAUgCGC-UUGa -5'
5957 5' -58.9 NC_001806.1 + 150344 0.67 0.709867
Target:  5'- gAGCgACCCGCgGG-CCaaUGCGCGAGg- -3'
miRNA:   3'- -UUGgUGGGCGgCCaGG--AUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 123938 0.67 0.709867
Target:  5'- gAACCGCCCGCC---CCUGCGCa---- -3'
miRNA:   3'- -UUGGUGGGCGGccaGGAUGCGcuuga -5'
5957 5' -58.9 NC_001806.1 + 144346 0.67 0.7
Target:  5'- -cCCGCCCcgcGCCGGUCCauuaaggGCGCGcguGCc -3'
miRNA:   3'- uuGGUGGG---CGGCCAGGa------UGCGCu--UGa -5'
5957 5' -58.9 NC_001806.1 + 114537 0.67 0.7
Target:  5'- cGCCcaauuuCCCcCCGGcCCUGCGCGAcCUg -3'
miRNA:   3'- uUGGu-----GGGcGGCCaGGAUGCGCUuGA- -5'
5957 5' -58.9 NC_001806.1 + 24606 0.68 0.690079
Target:  5'- -cCCACUCGCaCGccgCCUGCGCGcGCUg -3'
miRNA:   3'- uuGGUGGGCG-GCca-GGAUGCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 21582 0.68 0.690079
Target:  5'- cGCCgcGCCCGCCGGcccagCCgcCGCGGAg- -3'
miRNA:   3'- uUGG--UGGGCGGCCa----GGauGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 20319 0.68 0.690079
Target:  5'- -cCCGCCCGCCGG-CCaaUGgGgGGGCg -3'
miRNA:   3'- uuGGUGGGCGGCCaGG--AUgCgCUUGa -5'
5957 5' -58.9 NC_001806.1 + 123825 0.68 0.68011
Target:  5'- cGCCACCgauCCGG-CCUcCGCGAGCg -3'
miRNA:   3'- uUGGUGGgc-GGCCaGGAuGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 133779 0.68 0.68011
Target:  5'- cAUCACCUGCgCGaaaUCCUGCGCGAGa- -3'
miRNA:   3'- uUGGUGGGCG-GCc--AGGAUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 59063 0.68 0.68011
Target:  5'- gGGCCACaCCGCCaGGggaauccgucaUCCcaACGCGGGCUg -3'
miRNA:   3'- -UUGGUG-GGCGG-CC-----------AGGa-UGCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 78935 0.68 0.68011
Target:  5'- cGCCcgggGCCCGCCGuGUCUggugcuCGUGGACa -3'
miRNA:   3'- uUGG----UGGGCGGC-CAGGau----GCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 94791 0.68 0.68011
Target:  5'- gGACCAUgCGCUGGcCCggACGCGGGg- -3'
miRNA:   3'- -UUGGUGgGCGGCCaGGa-UGCGCUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.