Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5957 | 5' | -58.9 | NC_001806.1 | + | 50874 | 0.69 | 0.609711 |
Target: 5'- cACC-CCCGCCaaGUUCUGgGCGGACUc -3' miRNA: 3'- uUGGuGGGCGGc-CAGGAUgCGCUUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 123235 | 0.69 | 0.619779 |
Target: 5'- uGCCGCCCaCgCGGcCCUGCGCcGACg -3' miRNA: 3'- uUGGUGGGcG-GCCaGGAUGCGcUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 92663 | 0.68 | 0.650007 |
Target: 5'- cAACCAgcuuCCCGcCCGGcUCCUgucGCGCGAGg- -3' miRNA: 3'- -UUGGU----GGGC-GGCC-AGGA---UGCGCUUga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 26957 | 0.68 | 0.651013 |
Target: 5'- cGGCCGCCCGCCuGGcgcgCCgcggcucgugggccCGCGAGCg -3' miRNA: 3'- -UUGGUGGGCGG-CCa---GGau------------GCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 96634 | 0.68 | 0.660066 |
Target: 5'- cGACCGuCgCCGCgGGccacgccacCCUGCGCGAGCa -3' miRNA: 3'- -UUGGU-G-GGCGgCCa--------GGAUGCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 48040 | 0.68 | 0.660066 |
Target: 5'- uAACCuCCCGCUGGUgCgcaGCGCG-GCUa -3' miRNA: 3'- -UUGGuGGGCGGCCAgGa--UGCGCuUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 125691 | 0.68 | 0.660066 |
Target: 5'- cGCCACCUGCgCGGguugCUGCGCGGc-- -3' miRNA: 3'- uUGGUGGGCG-GCCag--GAUGCGCUuga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 5861 | 0.68 | 0.668097 |
Target: 5'- -cCCGCCCGCCGGacgCCgggaccaacgggACGgCGGGCg -3' miRNA: 3'- uuGGUGGGCGGCCa--GGa-----------UGC-GCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 135005 | 0.68 | 0.670103 |
Target: 5'- uGCC-CCCGCCcuGGUCCgGCGCGccucGCg -3' miRNA: 3'- uUGGuGGGCGG--CCAGGaUGCGCu---UGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 144153 | 0.68 | 0.670103 |
Target: 5'- -uCCACCCGCCGG-CCggcuaccgagAC-CGAACa -3' miRNA: 3'- uuGGUGGGCGGCCaGGa---------UGcGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 23027 | 0.68 | 0.670103 |
Target: 5'- cAugCGCCUGCgCGGggaCCUGCGCGuGGCc -3' miRNA: 3'- -UugGUGGGCG-GCCa--GGAUGCGC-UUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 94646 | 0.68 | 0.68011 |
Target: 5'- cGAUCGCCCGCCG--CCUG-GCGGACc -3' miRNA: 3'- -UUGGUGGGCGGCcaGGAUgCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 59063 | 0.68 | 0.68011 |
Target: 5'- gGGCCACaCCGCCaGGggaauccgucaUCCcaACGCGGGCUg -3' miRNA: 3'- -UUGGUG-GGCGG-CC-----------AGGa-UGCGCUUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 133779 | 0.68 | 0.68011 |
Target: 5'- cAUCACCUGCgCGaaaUCCUGCGCGAGa- -3' miRNA: 3'- uUGGUGGGCG-GCc--AGGAUGCGCUUga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 123825 | 0.68 | 0.68011 |
Target: 5'- cGCCACCgauCCGG-CCUcCGCGAGCg -3' miRNA: 3'- uUGGUGGgc-GGCCaGGAuGCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 94791 | 0.68 | 0.68011 |
Target: 5'- gGACCAUgCGCUGGcCCggACGCGGGg- -3' miRNA: 3'- -UUGGUGgGCGGCCaGGa-UGCGCUUga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 78935 | 0.68 | 0.68011 |
Target: 5'- cGCCcgggGCCCGCCGuGUCUggugcuCGUGGACa -3' miRNA: 3'- uUGG----UGGGCGGC-CAGGau----GCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 20319 | 0.68 | 0.690079 |
Target: 5'- -cCCGCCCGCCGG-CCaaUGgGgGGGCg -3' miRNA: 3'- uuGGUGGGCGGCCaGG--AUgCgCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 21582 | 0.68 | 0.690079 |
Target: 5'- cGCCgcGCCCGCCGGcccagCCgcCGCGGAg- -3' miRNA: 3'- uUGG--UGGGCGGCCa----GGauGCGCUUga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 24606 | 0.68 | 0.690079 |
Target: 5'- -cCCACUCGCaCGccgCCUGCGCGcGCUg -3' miRNA: 3'- uuGGUGGGCG-GCca-GGAUGCGCuUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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