Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5957 | 5' | -58.9 | NC_001806.1 | + | 9654 | 0.76 | 0.257479 |
Target: 5'- uAACCGCCCGCCaGGcacgCCUGCGCcAACa -3' miRNA: 3'- -UUGGUGGGCGG-CCa---GGAUGCGcUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 41700 | 0.75 | 0.288569 |
Target: 5'- uGCCGCCCGCCGuGUCCUccccgggACugGCGGGCg -3' miRNA: 3'- uUGGUGGGCGGC-CAGGA-------UG--CGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 51813 | 0.74 | 0.353953 |
Target: 5'- cGCCACCgugGCCGG-CCUGCGCGAc-- -3' miRNA: 3'- uUGGUGGg--CGGCCaGGAUGCGCUuga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 68154 | 0.74 | 0.353953 |
Target: 5'- -cUCACCCGCCGGUCCgccCuCGGACg -3' miRNA: 3'- uuGGUGGGCGGCCAGGau-GcGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 119462 | 0.74 | 0.361746 |
Target: 5'- cGCCGCCaC-CCGGUCCgaGCGCGGACc -3' miRNA: 3'- uUGGUGG-GcGGCCAGGa-UGCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 24763 | 0.73 | 0.41095 |
Target: 5'- cGCCccCCCGCUGGUgCUGCGCGGcgACg -3' miRNA: 3'- uUGGu-GGGCGGCCAgGAUGCGCU--UGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 46132 | 0.72 | 0.419546 |
Target: 5'- cGCCACCCGCUgGGUCCggagggGC-CGGACg -3' miRNA: 3'- uUGGUGGGCGG-CCAGGa-----UGcGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 102981 | 0.72 | 0.42825 |
Target: 5'- -cCCACCCGCCGGcucaUCCccGCGCGcGGCa -3' miRNA: 3'- uuGGUGGGCGGCC----AGGa-UGCGC-UUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 20882 | 0.72 | 0.454987 |
Target: 5'- cGCuCGCCgCGCCGGgacgCCgaUACGCGGACg -3' miRNA: 3'- uUG-GUGG-GCGGCCa---GG--AUGCGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 20363 | 0.71 | 0.491985 |
Target: 5'- gGGCCGCCCGCCgucccguuGGUCCcgGCguccgGCGGGCg -3' miRNA: 3'- -UUGGUGGGCGG--------CCAGGa-UG-----CGCUUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 105345 | 0.71 | 0.510998 |
Target: 5'- cAAUCGCCCGCCGGcugCCgggACGCccuGCUg -3' miRNA: 3'- -UUGGUGGGCGGCCa--GGa--UGCGcu-UGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 152061 | 0.7 | 0.559753 |
Target: 5'- cGCCGCCCGCCuuUUUUGCGCGcGCg -3' miRNA: 3'- uUGGUGGGCGGccAGGAUGCGCuUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 351 | 0.7 | 0.559753 |
Target: 5'- cGCCGCCCGCCuuUUUUGCGCGcGCg -3' miRNA: 3'- uUGGUGGGCGGccAGGAUGCGCuUGa -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 107034 | 0.7 | 0.569672 |
Target: 5'- uGGCCGCCCGCgGGgc---CGCGGGCUg -3' miRNA: 3'- -UUGGUGGGCGgCCaggauGCGCUUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 102434 | 0.7 | 0.569672 |
Target: 5'- cGGCC-CCCGCCGG-CC---GCGAACUg -3' miRNA: 3'- -UUGGuGGGCGGCCaGGaugCGCUUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 115979 | 0.7 | 0.569672 |
Target: 5'- -cCCACCC-CCcGUCCUAUGCGAGg- -3' miRNA: 3'- uuGGUGGGcGGcCAGGAUGCGCUUga -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 28143 | 0.69 | 0.586629 |
Target: 5'- cGAgUACCCGCCGG-CCUgagggccgcccccaGCGCGAGgUg -3' miRNA: 3'- -UUgGUGGGCGGCCaGGA--------------UGCGCUUgA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 47988 | 0.69 | 0.598656 |
Target: 5'- uGCCaaucgagGCCCGCCGG--CUGCGgGAGCUa -3' miRNA: 3'- uUGG-------UGGGCGGCCagGAUGCgCUUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 22972 | 0.69 | 0.59966 |
Target: 5'- -cCCGCCUGCgCGcGUggCUGCGCGAGCUg -3' miRNA: 3'- uuGGUGGGCG-GC-CAg-GAUGCGCUUGA- -5' |
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5957 | 5' | -58.9 | NC_001806.1 | + | 50874 | 0.69 | 0.609711 |
Target: 5'- cACC-CCCGCCaaGUUCUGgGCGGACUc -3' miRNA: 3'- uUGGuGGGCGGc-CAGGAUgCGCUUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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