miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 5' -58.9 NC_001806.1 + 351 0.7 0.559753
Target:  5'- cGCCGCCCGCCuuUUUUGCGCGcGCg -3'
miRNA:   3'- uUGGUGGGCGGccAGGAUGCGCuUGa -5'
5957 5' -58.9 NC_001806.1 + 1719 0.67 0.748606
Target:  5'- cGCCGCCCgGCC-GUCCaGCGCcGGCa -3'
miRNA:   3'- uUGGUGGG-CGGcCAGGaUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 2068 0.67 0.71967
Target:  5'- uGACCACgaugagCCGCCGGUCgCcgGCgcugGCGAGCa -3'
miRNA:   3'- -UUGGUG------GGCGGCCAG-Ga-UG----CGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 2120 0.66 0.785759
Target:  5'- cACgGCCCcggcgaagGCCaGGUCCcGCGUGGACa -3'
miRNA:   3'- uUGgUGGG--------CGG-CCAGGaUGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 2320 0.67 0.7294
Target:  5'- cGCCGCCgGCCaGGUCCU-CGCccGGCa -3'
miRNA:   3'- uUGGUGGgCGG-CCAGGAuGCGc-UUGa -5'
5957 5' -58.9 NC_001806.1 + 3459 0.67 0.709867
Target:  5'- cGGCCACgCgGCCGG-CCUGgGCGcGGCg -3'
miRNA:   3'- -UUGGUG-GgCGGCCaGGAUgCGC-UUGa -5'
5957 5' -58.9 NC_001806.1 + 5861 0.68 0.668097
Target:  5'- -cCCGCCCGCCGGacgCCgggaccaacgggACGgCGGGCg -3'
miRNA:   3'- uuGGUGGGCGGCCa--GGa-----------UGC-GCUUGa -5'
5957 5' -58.9 NC_001806.1 + 9654 0.76 0.257479
Target:  5'- uAACCGCCCGCCaGGcacgCCUGCGCcAACa -3'
miRNA:   3'- -UUGGUGGGCGG-CCa---GGAUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 17521 0.66 0.780309
Target:  5'- -cCCACCCGCCcgaucgugcgcacuaGGUCCUGuCGCu---- -3'
miRNA:   3'- uuGGUGGGCGG---------------CCAGGAU-GCGcuuga -5'
5957 5' -58.9 NC_001806.1 + 20167 0.67 0.739048
Target:  5'- cGCCGCCCGggcccgcccCCGGggCCgGCGCGGAg- -3'
miRNA:   3'- uUGGUGGGC---------GGCCa-GGaUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 20319 0.68 0.690079
Target:  5'- -cCCGCCCGCCGG-CCaaUGgGgGGGCg -3'
miRNA:   3'- uuGGUGGGCGGCCaGG--AUgCgCUUGa -5'
5957 5' -58.9 NC_001806.1 + 20363 0.71 0.491985
Target:  5'- gGGCCGCCCGCCgucccguuGGUCCcgGCguccgGCGGGCg -3'
miRNA:   3'- -UUGGUGGGCGG--------CCAGGa-UG-----CGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 20882 0.72 0.454987
Target:  5'- cGCuCGCCgCGCCGGgacgCCgaUACGCGGACg -3'
miRNA:   3'- uUG-GUGG-GCGGCCa---GG--AUGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 21582 0.68 0.690079
Target:  5'- cGCCgcGCCCGCCGGcccagCCgcCGCGGAg- -3'
miRNA:   3'- uUGG--UGGGCGGCCa----GGauGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 22743 0.66 0.758066
Target:  5'- cGCCGCCCGCCacgCCgACGCcGACg -3'
miRNA:   3'- uUGGUGGGCGGccaGGaUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 22972 0.69 0.59966
Target:  5'- -cCCGCCUGCgCGcGUggCUGCGCGAGCUg -3'
miRNA:   3'- uuGGUGGGCG-GC-CAg-GAUGCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 23027 0.68 0.670103
Target:  5'- cAugCGCCUGCgCGGggaCCUGCGCGuGGCc -3'
miRNA:   3'- -UugGUGGGCG-GCCa--GGAUGCGC-UUGa -5'
5957 5' -58.9 NC_001806.1 + 24606 0.68 0.690079
Target:  5'- -cCCACUCGCaCGccgCCUGCGCGcGCUg -3'
miRNA:   3'- uuGGUGGGCG-GCca-GGAUGCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 24763 0.73 0.41095
Target:  5'- cGCCccCCCGCUGGUgCUGCGCGGcgACg -3'
miRNA:   3'- uUGGu-GGGCGGCCAgGAUGCGCU--UGa -5'
5957 5' -58.9 NC_001806.1 + 26957 0.68 0.651013
Target:  5'- cGGCCGCCCGCCuGGcgcgCCgcggcucgugggccCGCGAGCg -3'
miRNA:   3'- -UUGGUGGGCGG-CCa---GGau------------GCGCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.