miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 5' -58.9 NC_001806.1 + 152061 0.7 0.559753
Target:  5'- cGCCGCCCGCCuuUUUUGCGCGcGCg -3'
miRNA:   3'- uUGGUGGGCGGccAGGAUGCGCuUGa -5'
5957 5' -58.9 NC_001806.1 + 150344 0.67 0.709867
Target:  5'- gAGCgACCCGCgGG-CCaaUGCGCGAGg- -3'
miRNA:   3'- -UUGgUGGGCGgCCaGG--AUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 144859 0.67 0.748606
Target:  5'- -cCCGCUCGCCGG-CaCgcgACGCGAAa- -3'
miRNA:   3'- uuGGUGGGCGGCCaG-Ga--UGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 144346 0.67 0.7
Target:  5'- -cCCGCCCcgcGCCGGUCCauuaaggGCGCGcguGCc -3'
miRNA:   3'- uuGGUGGG---CGGCCAGGa------UGCGCu--UGa -5'
5957 5' -58.9 NC_001806.1 + 144153 0.68 0.670103
Target:  5'- -uCCACCCGCCGG-CCggcuaccgagAC-CGAACa -3'
miRNA:   3'- uuGGUGGGCGGCCaGGa---------UGcGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 135005 0.68 0.670103
Target:  5'- uGCC-CCCGCCcuGGUCCgGCGCGccucGCg -3'
miRNA:   3'- uUGGuGGGCGG--CCAGGaUGCGCu---UGa -5'
5957 5' -58.9 NC_001806.1 + 133779 0.68 0.68011
Target:  5'- cAUCACCUGCgCGaaaUCCUGCGCGAGa- -3'
miRNA:   3'- uUGGUGGGCG-GCc--AGGAUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 125691 0.68 0.660066
Target:  5'- cGCCACCUGCgCGGguugCUGCGCGGc-- -3'
miRNA:   3'- uUGGUGGGCG-GCCag--GAUGCGCUuga -5'
5957 5' -58.9 NC_001806.1 + 123938 0.67 0.709867
Target:  5'- gAACCGCCCGCC---CCUGCGCa---- -3'
miRNA:   3'- -UUGGUGGGCGGccaGGAUGCGcuuga -5'
5957 5' -58.9 NC_001806.1 + 123825 0.68 0.68011
Target:  5'- cGCCACCgauCCGG-CCUcCGCGAGCg -3'
miRNA:   3'- uUGGUGGgc-GGCCaGGAuGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 123235 0.69 0.619779
Target:  5'- uGCCGCCCaCgCGGcCCUGCGCcGACg -3'
miRNA:   3'- uUGGUGGGcG-GCCaGGAUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 119462 0.74 0.361746
Target:  5'- cGCCGCCaC-CCGGUCCgaGCGCGGACc -3'
miRNA:   3'- uUGGUGG-GcGGCCAGGa-UGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 116198 0.67 0.7294
Target:  5'- cGACCAUCCGCCGGcaaCUgACGCuGGCc -3'
miRNA:   3'- -UUGGUGGGCGGCCag-GA-UGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 115979 0.7 0.569672
Target:  5'- -cCCACCC-CCcGUCCUAUGCGAGg- -3'
miRNA:   3'- uuGGUGGGcGGcCAGGAUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 114537 0.67 0.7
Target:  5'- cGCCcaauuuCCCcCCGGcCCUGCGCGAcCUg -3'
miRNA:   3'- uUGGu-----GGGcGGCCaGGAUGCGCUuGA- -5'
5957 5' -58.9 NC_001806.1 + 113618 0.66 0.767416
Target:  5'- cGACUACUCGCUGGUCUcgUACGuCGuGACc -3'
miRNA:   3'- -UUGGUGGGCGGCCAGG--AUGC-GC-UUGa -5'
5957 5' -58.9 NC_001806.1 + 108553 0.66 0.794734
Target:  5'- uGGCCgcGCCCGCCGcUCCgcggucaaACGCGGAa- -3'
miRNA:   3'- -UUGG--UGGGCGGCcAGGa-------UGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 107034 0.7 0.569672
Target:  5'- uGGCCGCCCGCgGGgc---CGCGGGCUg -3'
miRNA:   3'- -UUGGUGGGCGgCCaggauGCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 106110 0.66 0.803567
Target:  5'- uACCugCUcgGCCGGcCCccgaACGCGAGCc -3'
miRNA:   3'- uUGGugGG--CGGCCaGGa---UGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 105345 0.71 0.510998
Target:  5'- cAAUCGCCCGCCGGcugCCgggACGCccuGCUg -3'
miRNA:   3'- -UUGGUGGGCGGCCa--GGa--UGCGcu-UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.