miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5958 5' -57.6 NC_001806.1 + 113141 0.66 0.84316
Target:  5'- cGCCUggggGCAGCGCCUG-GC-CCAc-- -3'
miRNA:   3'- cCGGGa---UGUCGUGGACgCGaGGUagu -5'
5958 5' -57.6 NC_001806.1 + 43485 0.66 0.84316
Target:  5'- aGGCCCccacgaucgACGGgGCCgugGCGgC-CCAUCAg -3'
miRNA:   3'- -CCGGGa--------UGUCgUGGa--CGC-GaGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 143418 0.66 0.834998
Target:  5'- cGGCUCUuacgaGCGGCccgGCCcGCGCUCCc--- -3'
miRNA:   3'- -CCGGGA-----UGUCG---UGGaCGCGAGGuagu -5'
5958 5' -57.6 NC_001806.1 + 69266 0.66 0.834998
Target:  5'- cGCCCaGCAGCGgCUGCugGCUCUg--- -3'
miRNA:   3'- cCGGGaUGUCGUgGACG--CGAGGuagu -5'
5958 5' -57.6 NC_001806.1 + 69085 0.66 0.825808
Target:  5'- cGGCCCU-CAGCcgcgucaGCCcGCGCUCgGc-- -3'
miRNA:   3'- -CCGGGAuGUCG-------UGGaCGCGAGgUagu -5'
5958 5' -57.6 NC_001806.1 + 106372 0.66 0.818131
Target:  5'- gGGCCCgGCGGCACCcGacgacggaGCUggaCAUCAc -3'
miRNA:   3'- -CCGGGaUGUCGUGGaCg-------CGAg--GUAGU- -5'
5958 5' -57.6 NC_001806.1 + 2531 0.66 0.818131
Target:  5'- gGGCCCgGC-GCACC-GCGCggCgAUCGa -3'
miRNA:   3'- -CCGGGaUGuCGUGGaCGCGa-GgUAGU- -5'
5958 5' -57.6 NC_001806.1 + 96306 0.66 0.818131
Target:  5'- cGGUCCUcCAGCACCU-CGCccCCAg-- -3'
miRNA:   3'- -CCGGGAuGUCGUGGAcGCGa-GGUagu -5'
5958 5' -57.6 NC_001806.1 + 108538 0.66 0.817269
Target:  5'- cGGCCCgcgUGCGGCuggccgcGCCcGcCGCUCCgcgGUCAa -3'
miRNA:   3'- -CCGGG---AUGUCG-------UGGaC-GCGAGG---UAGU- -5'
5958 5' -57.6 NC_001806.1 + 112058 0.66 0.815541
Target:  5'- aGGCCCUGgacgggacggguauCGGCGCgcaucgccagUUGCGCgCCAUCc -3'
miRNA:   3'- -CCGGGAU--------------GUCGUG----------GACGCGaGGUAGu -5'
5958 5' -57.6 NC_001806.1 + 38188 0.66 0.815541
Target:  5'- gGGCgCUgguugaggaucguuGgGGC-CCUGcCGCUCCGUCGg -3'
miRNA:   3'- -CCGgGA--------------UgUCGuGGAC-GCGAGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 74532 0.66 0.812936
Target:  5'- cGGCCCUgggccagcagcuggACAGCGacgcggccuuuguuCCUGCGC-CCGgcgCGu -3'
miRNA:   3'- -CCGGGA--------------UGUCGU--------------GGACGCGaGGUa--GU- -5'
5958 5' -57.6 NC_001806.1 + 20355 0.66 0.809441
Target:  5'- cGGCCCUugGGcCGCCcGcCGUcCCGUUg -3'
miRNA:   3'- -CCGGGAugUC-GUGGaC-GCGaGGUAGu -5'
5958 5' -57.6 NC_001806.1 + 119127 0.66 0.809441
Target:  5'- cGGCCg-ACAGCACgcgcaucaUGCGCgUCUGUCGg -3'
miRNA:   3'- -CCGGgaUGUCGUGg-------ACGCG-AGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 140886 0.66 0.809441
Target:  5'- gGGCCCguCGGUACaggGCGggCCGUCAu -3'
miRNA:   3'- -CCGGGauGUCGUGga-CGCgaGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 4343 0.66 0.809441
Target:  5'- gGGCCCgGCGGCGCUcgaUGCGg-CCcgCGg -3'
miRNA:   3'- -CCGGGaUGUCGUGG---ACGCgaGGuaGU- -5'
5958 5' -57.6 NC_001806.1 + 120019 0.67 0.80059
Target:  5'- -cCCCUGCGcCACCcGCGCcCCGUCc -3'
miRNA:   3'- ccGGGAUGUcGUGGaCGCGaGGUAGu -5'
5958 5' -57.6 NC_001806.1 + 30445 0.67 0.782443
Target:  5'- gGGCCCUcccGCGGCGCC-GCcccCUCCggCGc -3'
miRNA:   3'- -CCGGGA---UGUCGUGGaCGc--GAGGuaGU- -5'
5958 5' -57.6 NC_001806.1 + 102671 0.67 0.781521
Target:  5'- uGGCCCacaUACAGCcggccgcacGCCUGCagggacaguaccaGCgCCGUCAu -3'
miRNA:   3'- -CCGGG---AUGUCG---------UGGACG-------------CGaGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 45953 0.67 0.781521
Target:  5'- cGCCCUACAGaCACgCUcGCGCcagaggggcgaggUCCGUUu -3'
miRNA:   3'- cCGGGAUGUC-GUG-GA-CGCG-------------AGGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.