miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5959 3' -62.1 NC_001806.1 + 44651 0.66 0.665055
Target:  5'- -cCGCCCucggcgucgcGCCGguAGGGCCGUaGUCaCGCu -3'
miRNA:   3'- caGCGGGu---------UGGC--UCCCGGCG-CAG-GUG- -5'
5959 3' -62.1 NC_001806.1 + 147545 0.66 0.665055
Target:  5'- -aCGCCCGGCCcccccGaGCCGCGcgCCACc -3'
miRNA:   3'- caGCGGGUUGGcuc--C-CGGCGCa-GGUG- -5'
5959 3' -62.1 NC_001806.1 + 108918 0.66 0.665055
Target:  5'- gGUCGUCgGGCCGAGggacguacaGGCCGUGg-CGCu -3'
miRNA:   3'- -CAGCGGgUUGGCUC---------CCGGCGCagGUG- -5'
5959 3' -62.1 NC_001806.1 + 99799 0.66 0.665055
Target:  5'- gGUCcCCCAcCUGAGGGCgauagUGCG-CCACc -3'
miRNA:   3'- -CAGcGGGUuGGCUCCCG-----GCGCaGGUG- -5'
5959 3' -62.1 NC_001806.1 + 67145 0.66 0.665055
Target:  5'- cUCGcCCCGACCccaGGGcGGUCGCcUCCAUc -3'
miRNA:   3'- cAGC-GGGUUGG---CUC-CCGGCGcAGGUG- -5'
5959 3' -62.1 NC_001806.1 + 34406 0.66 0.665055
Target:  5'- gGUgGCCgGGCCGGgccGGGCCGgG-CCGg -3'
miRNA:   3'- -CAgCGGgUUGGCU---CCCGGCgCaGGUg -5'
5959 3' -62.1 NC_001806.1 + 15840 0.66 0.655246
Target:  5'- uGUCGCaCgGGCCccuuuuGGGGCCGCGgggggCCGa -3'
miRNA:   3'- -CAGCG-GgUUGGc-----UCCCGGCGCa----GGUg -5'
5959 3' -62.1 NC_001806.1 + 72593 0.66 0.655246
Target:  5'- aGUCGCCgCcACCGAcccGGGCC-CGUCgCGa -3'
miRNA:   3'- -CAGCGG-GuUGGCU---CCCGGcGCAG-GUg -5'
5959 3' -62.1 NC_001806.1 + 4752 0.66 0.655246
Target:  5'- --gGCCCggUCGccGGCgGCGUCgGCu -3'
miRNA:   3'- cagCGGGuuGGCucCCGgCGCAGgUG- -5'
5959 3' -62.1 NC_001806.1 + 70502 0.66 0.655246
Target:  5'- -aCGCCCGACCGccuGGGGCCcUGgccccccgaggCCAUg -3'
miRNA:   3'- caGCGGGUUGGC---UCCCGGcGCa----------GGUG- -5'
5959 3' -62.1 NC_001806.1 + 23569 0.66 0.64542
Target:  5'- --gGCCCAGCCacacGGCgGCGcCCGCg -3'
miRNA:   3'- cagCGGGUUGGcuc-CCGgCGCaGGUG- -5'
5959 3' -62.1 NC_001806.1 + 27783 0.66 0.64542
Target:  5'- --gGCCCccaAAUCGGGGGCCGgG-CCGu -3'
miRNA:   3'- cagCGGG---UUGGCUCCCGGCgCaGGUg -5'
5959 3' -62.1 NC_001806.1 + 68580 0.66 0.64542
Target:  5'- -gCGCaCCGcggcgGCCcuGGGGCCG-GUCCGCg -3'
miRNA:   3'- caGCG-GGU-----UGGc-UCCCGGCgCAGGUG- -5'
5959 3' -62.1 NC_001806.1 + 150459 0.66 0.64542
Target:  5'- gGUUGCCCAuua-AGGGCCGCGggaauugCCGg -3'
miRNA:   3'- -CAGCGGGUuggcUCCCGGCGCa------GGUg -5'
5959 3' -62.1 NC_001806.1 + 91399 0.66 0.64542
Target:  5'- -gUGCCCGGguUCGAGGGUCG-GcCCACc -3'
miRNA:   3'- caGCGGGUU--GGCUCCCGGCgCaGGUG- -5'
5959 3' -62.1 NC_001806.1 + 66622 0.66 0.625746
Target:  5'- -gCGCCCAaacaGCCGcuccAGGGCCGgcUCCAa -3'
miRNA:   3'- caGCGGGU----UGGC----UCCCGGCgcAGGUg -5'
5959 3' -62.1 NC_001806.1 + 56250 0.66 0.625746
Target:  5'- cGUCGCcgCCAACC--GGGCCcCGUCCcCg -3'
miRNA:   3'- -CAGCG--GGUUGGcuCCCGGcGCAGGuG- -5'
5959 3' -62.1 NC_001806.1 + 10571 0.66 0.625746
Target:  5'- uGUCGCCCAcggACaGGGuauacaGGCCGCuGUCCGu -3'
miRNA:   3'- -CAGCGGGU---UGgCUC------CCGGCG-CAGGUg -5'
5959 3' -62.1 NC_001806.1 + 80329 0.66 0.622795
Target:  5'- -gCGCCC--CCGGGGgcauuugaccgucaGCCGCcuGUCCGCg -3'
miRNA:   3'- caGCGGGuuGGCUCC--------------CGGCG--CAGGUG- -5'
5959 3' -62.1 NC_001806.1 + 73986 0.66 0.619845
Target:  5'- -cCGcCCCGGCCGGGGcGgccccgcagggggcuCCGCGcCCACc -3'
miRNA:   3'- caGC-GGGUUGGCUCC-C---------------GGCGCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.