miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5959 5' -53.4 NC_001806.1 + 147740 0.66 0.959954
Target:  5'- ---cGGCCgCgCGGGGGcgcgCGggUCCCGACg -3'
miRNA:   3'- aauaUUGG-G-GCCCCCa---GUa-AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 147228 0.66 0.963533
Target:  5'- ---cGGCCCCcgcGGGGGUCGgggCCGAg -3'
miRNA:   3'- aauaUUGGGG---CCCCCAGUaagGGUUg -5'
5959 5' -53.4 NC_001806.1 + 146738 0.69 0.86139
Target:  5'- aUGUucCCCaCGGGGGUCAU-CCagaGGCu -3'
miRNA:   3'- aAUAuuGGG-GCCCCCAGUAaGGg--UUG- -5'
5959 5' -53.4 NC_001806.1 + 143616 0.72 0.702866
Target:  5'- -----uCCCCGGGGGcCGUUaucUCCAGCg -3'
miRNA:   3'- aauauuGGGGCCCCCaGUAA---GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 142596 0.67 0.916733
Target:  5'- uUUAUAGCCgaGGGGGUC--UCgUAACg -3'
miRNA:   3'- -AAUAUUGGggCCCCCAGuaAGgGUUG- -5'
5959 5' -53.4 NC_001806.1 + 134528 0.66 0.963533
Target:  5'- -cGUGGCUUCGGGGGcaGUUCuCCAGg -3'
miRNA:   3'- aaUAUUGGGGCCCCCagUAAG-GGUUg -5'
5959 5' -53.4 NC_001806.1 + 132138 0.67 0.933399
Target:  5'- cUAUGGCCCUGGcGGcGcgCGUugccgagcaUCCCGACg -3'
miRNA:   3'- aAUAUUGGGGCC-CC-Ca-GUA---------AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 116249 0.67 0.922543
Target:  5'- -----uCUCCGGaGGcGUCAgUCCCGACa -3'
miRNA:   3'- aauauuGGGGCC-CC-CAGUaAGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 113649 0.67 0.916733
Target:  5'- ----uACCUCGGGGGagAccUUCCCGAg -3'
miRNA:   3'- aauauUGGGGCCCCCagU--AAGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 113276 0.66 0.947788
Target:  5'- -gGUGGCCgacguggagcugCCGGGGGgggaCGUUCCCccGGCc -3'
miRNA:   3'- aaUAUUGG------------GGCCCCCa---GUAAGGG--UUG- -5'
5959 5' -53.4 NC_001806.1 + 110324 0.74 0.587381
Target:  5'- ---cAACCCCGGGcGU-GUUCCCGACa -3'
miRNA:   3'- aauaUUGGGGCCCcCAgUAAGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 107810 0.68 0.897796
Target:  5'- ----uGCCCCGGGGGaUCGgcuacaagcUCaCCGGCg -3'
miRNA:   3'- aauauUGGGGCCCCC-AGUa--------AG-GGUUG- -5'
5959 5' -53.4 NC_001806.1 + 106689 0.71 0.753573
Target:  5'- -----cCCCCGGGGGcUC-UUCCCGGg -3'
miRNA:   3'- aauauuGGGGCCCCC-AGuAAGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 102102 0.71 0.782714
Target:  5'- ---cGGCUCCGGGGaUCAgcaugCCCAGCu -3'
miRNA:   3'- aauaUUGGGGCCCCcAGUaa---GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 101113 0.71 0.773131
Target:  5'- ---cGGCCCgCGGGGGUCGUcgaCCaCGGCc -3'
miRNA:   3'- aauaUUGGG-GCCCCCAGUAa--GG-GUUG- -5'
5959 5' -53.4 NC_001806.1 + 95433 0.68 0.904358
Target:  5'- ---gGGCCCgGGGGG-CAggggCCCGAg -3'
miRNA:   3'- aauaUUGGGgCCCCCaGUaa--GGGUUg -5'
5959 5' -53.4 NC_001806.1 + 93919 0.66 0.963533
Target:  5'- ---gGACCCCGGGGcUCAg--CCAGa -3'
miRNA:   3'- aauaUUGGGGCCCCcAGUaagGGUUg -5'
5959 5' -53.4 NC_001806.1 + 92607 0.67 0.938447
Target:  5'- ---aAGCCCCcGGGGUCcaa-CCAGCc -3'
miRNA:   3'- aauaUUGGGGcCCCCAGuaagGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 92402 0.71 0.773131
Target:  5'- -cGUGACCCUGGGGu---UUCCCAAg -3'
miRNA:   3'- aaUAUUGGGGCCCCcaguAAGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 90995 0.66 0.959954
Target:  5'- ---aGACCCCGcGGGG-CGggCgCGACg -3'
miRNA:   3'- aauaUUGGGGC-CCCCaGUaaGgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.