Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5960 | 5' | -59.6 | NC_001806.1 | + | 50423 | 0.67 | 0.663796 |
Target: 5'- -gCCUGCACCCgCaCgUGCa--CCACCCc -3' miRNA: 3'- uaGGAUGUGGG-G-GgACGgaaGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 109381 | 0.67 | 0.653759 |
Target: 5'- -gCCcGCGCCCCCCgaccccGCCccCgACCCg -3' miRNA: 3'- uaGGaUGUGGGGGGa-----CGGaaGgUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 79793 | 0.67 | 0.653759 |
Target: 5'- uUUCgcGCGCCCCCCgGCCccUCCcaaACCCc -3' miRNA: 3'- uAGGa-UGUGGGGGGaCGGa-AGG---UGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 151125 | 0.67 | 0.683789 |
Target: 5'- cUCCgGCGCCCCCU--CC--CCGCCCg -3' miRNA: 3'- uAGGaUGUGGGGGGacGGaaGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 75285 | 0.67 | 0.683789 |
Target: 5'- -cCCgGCcuCCCCCCUgGCCUUCCuagcgGCCa -3' miRNA: 3'- uaGGaUGu-GGGGGGA-CGGAAGG-----UGGg -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 53244 | 0.67 | 0.691744 |
Target: 5'- -cCCUAUuuuCCCCCCcggGCCgcaccgggcccCCGCCCc -3' miRNA: 3'- uaGGAUGu--GGGGGGa--CGGaa---------GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 147918 | 0.67 | 0.703617 |
Target: 5'- cGUCCg--GCCCCUCgGCCgccCCGCCUc -3' miRNA: 3'- -UAGGaugUGGGGGGaCGGaa-GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 145984 | 0.67 | 0.703617 |
Target: 5'- -cCCUuuuggGCGCCCCguCCcGCCccgCCACCCc -3' miRNA: 3'- uaGGA-----UGUGGGG--GGaCGGaa-GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 114199 | 0.67 | 0.703617 |
Target: 5'- -cCCcGCGCaCCCCCUGCac-CCGgCCa -3' miRNA: 3'- uaGGaUGUG-GGGGGACGgaaGGUgGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 100629 | 0.67 | 0.703617 |
Target: 5'- uGUCCgGCgAUCCCggCCUGCCgccgCCGCUCg -3' miRNA: 3'- -UAGGaUG-UGGGG--GGACGGaa--GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 60019 | 0.67 | 0.703617 |
Target: 5'- gGUCCggaGCCgCgCUGCCgUCCGCCg -3' miRNA: 3'- -UAGGaugUGGgGgGACGGaAGGUGGg -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 81911 | 0.67 | 0.703617 |
Target: 5'- uUCCggcCACCCCCagcccgGCCU-CgGCCCc -3' miRNA: 3'- uAGGau-GUGGGGGga----CGGAaGgUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 127267 | 0.67 | 0.703617 |
Target: 5'- -aCCgGCggACCCCcggaggcgCCUGCCccgCCACCCa -3' miRNA: 3'- uaGGaUG--UGGGG--------GGACGGaa-GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 23814 | 0.67 | 0.703617 |
Target: 5'- cUCUUugGCCCCCUgcgcGCCUcggGCCCg -3' miRNA: 3'- uAGGAugUGGGGGGa---CGGAaggUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 143644 | 0.67 | 0.69769 |
Target: 5'- cGUCCggcgcgcCGCCCCCC-GCCgcuaaaccccaucCCGCCCc -3' miRNA: 3'- -UAGGau-----GUGGGGGGaCGGaa-----------GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 148937 | 0.67 | 0.693728 |
Target: 5'- cGUCCcccCGCCCCCCcacuucgGUCU-CCGCCUc -3' miRNA: 3'- -UAGGau-GUGGGGGGa------CGGAaGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 144306 | 0.67 | 0.693728 |
Target: 5'- -cCCgcgACACCCCCC--CC--CCGCCCg -3' miRNA: 3'- uaGGa--UGUGGGGGGacGGaaGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 16967 | 0.68 | 0.643704 |
Target: 5'- cUCCUcCuuCCUCCUGCCcugUCC-CCCg -3' miRNA: 3'- uAGGAuGugGGGGGACGGa--AGGuGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 9632 | 0.68 | 0.643704 |
Target: 5'- -cCCU-UACCCgaggCCCUGCUUUuaaCCGCCCg -3' miRNA: 3'- uaGGAuGUGGG----GGGACGGAA---GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 32536 | 0.68 | 0.643704 |
Target: 5'- -aCCgGCcgACCCCCUggcgGUCUUCCAgCCg -3' miRNA: 3'- uaGGaUG--UGGGGGGa---CGGAAGGUgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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