miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5960 5' -59.6 NC_001806.1 + 145930 0.66 0.761421
Target:  5'- -cCCccCACCCCUCcGCC--CCACCCc -3'
miRNA:   3'- uaGGauGUGGGGGGaCGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 72149 0.66 0.761421
Target:  5'- -cCCUGCG-CCCCCUGUCguacaCGCUCc -3'
miRNA:   3'- uaGGAUGUgGGGGGACGGaag--GUGGG- -5'
5960 5' -59.6 NC_001806.1 + 7504 0.66 0.760485
Target:  5'- ---gUAUGCCCCCCUGgcgagcccagaccCCUUCUcCCCa -3'
miRNA:   3'- uaggAUGUGGGGGGAC-------------GGAAGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 114427 0.66 0.755789
Target:  5'- aAUCCUGCugaugGCCCCCCaGCaucuggaccauaCCAUCCa -3'
miRNA:   3'- -UAGGAUG-----UGGGGGGaCGgaa---------GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 24775 0.66 0.755789
Target:  5'- gGUgCUGCgcggcgacgacgacgGCCCgggggCCCUGCCgccggcgCCGCCCg -3'
miRNA:   3'- -UAgGAUG---------------UGGG-----GGGACGGaa-----GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 147304 0.66 0.752013
Target:  5'- gGUCCcGgGCCCaCCCUgGCCgcgCCcCCCc -3'
miRNA:   3'- -UAGGaUgUGGG-GGGA-CGGaa-GGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 43756 0.66 0.752013
Target:  5'- cUCCUugggGCACCCCCacacGCCg-CC-CCCg -3'
miRNA:   3'- uAGGA----UGUGGGGGga--CGGaaGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 73472 0.66 0.752013
Target:  5'- -cCCggcCGCCgCCCUGCUggagUUUACCCu -3'
miRNA:   3'- uaGGau-GUGGgGGGACGGa---AGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 88293 0.66 0.752013
Target:  5'- gGUCgCUcAUGCCCCCCUcgaugGCCagguugUCCGCCg -3'
miRNA:   3'- -UAG-GA-UGUGGGGGGA-----CGGa-----AGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 124357 0.66 0.752013
Target:  5'- -cCCUGCGCacaacaaaCCCCUcggucucgacgGCCcUCCACCa -3'
miRNA:   3'- uaGGAUGUGg-------GGGGA-----------CGGaAGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 22677 0.66 0.752013
Target:  5'- gAUCCU-CGCCgCCCUggggcgGCUgUCCGCCg -3'
miRNA:   3'- -UAGGAuGUGG-GGGGa-----CGGaAGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 102816 0.66 0.752013
Target:  5'- gGUCCcgaACACCaCCCCcgacgaGCCggUCGCCCc -3'
miRNA:   3'- -UAGGa--UGUGG-GGGGa-----CGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 23814 0.67 0.703617
Target:  5'- cUCUUugGCCCCCUgcgcGCCUcggGCCCg -3'
miRNA:   3'- uAGGAugUGGGGGGa---CGGAaggUGGG- -5'
5960 5' -59.6 NC_001806.1 + 127267 0.67 0.703617
Target:  5'- -aCCgGCggACCCCcggaggcgCCUGCCccgCCACCCa -3'
miRNA:   3'- uaGGaUG--UGGGG--------GGACGGaa-GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 81911 0.67 0.703617
Target:  5'- uUCCggcCACCCCCagcccgGCCU-CgGCCCc -3'
miRNA:   3'- uAGGau-GUGGGGGga----CGGAaGgUGGG- -5'
5960 5' -59.6 NC_001806.1 + 60019 0.67 0.703617
Target:  5'- gGUCCggaGCCgCgCUGCCgUCCGCCg -3'
miRNA:   3'- -UAGGaugUGGgGgGACGGaAGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 100629 0.67 0.703617
Target:  5'- uGUCCgGCgAUCCCggCCUGCCgccgCCGCUCg -3'
miRNA:   3'- -UAGGaUG-UGGGG--GGACGGaa--GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 114199 0.67 0.703617
Target:  5'- -cCCcGCGCaCCCCCUGCac-CCGgCCa -3'
miRNA:   3'- uaGGaUGUG-GGGGGACGgaaGGUgGG- -5'
5960 5' -59.6 NC_001806.1 + 145984 0.67 0.703617
Target:  5'- -cCCUuuuggGCGCCCCguCCcGCCccgCCACCCc -3'
miRNA:   3'- uaGGA-----UGUGGGG--GGaCGGaa-GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 143644 0.67 0.69769
Target:  5'- cGUCCggcgcgcCGCCCCCC-GCCgcuaaaccccaucCCGCCCc -3'
miRNA:   3'- -UAGGau-----GUGGGGGGaCGGaa-----------GGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.