miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5960 5' -59.6 NC_001806.1 + 38689 0.7 0.495716
Target:  5'- cUCCUcguucCGCCCCCCgggcgggGCCc-CCGCCCc -3'
miRNA:   3'- uAGGAu----GUGGGGGGa------CGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 94219 0.7 0.495716
Target:  5'- -gCCUuucuCACCCCgCUGUCggUCACCCu -3'
miRNA:   3'- uaGGAu---GUGGGGgGACGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 143445 0.7 0.505201
Target:  5'- cUCC--CACCCCCCgggccguguccuUGCUUUCCcCCCg -3'
miRNA:   3'- uAGGauGUGGGGGG------------ACGGAAGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 103673 0.7 0.5244
Target:  5'- gAUCCUcuuaaGCACCCCCCcGCCcUCCGu-- -3'
miRNA:   3'- -UAGGA-----UGUGGGGGGaCGGaAGGUggg -5'
5960 5' -59.6 NC_001806.1 + 120020 0.7 0.5244
Target:  5'- -cCCUGCGCCaCCCgcGCCccgUCCugCCg -3'
miRNA:   3'- uaGGAUGUGGgGGGa-CGGa--AGGugGG- -5'
5960 5' -59.6 NC_001806.1 + 88236 0.69 0.534103
Target:  5'- cGUCCU-C-CCCCCCcGCCUUgCAUUCg -3'
miRNA:   3'- -UAGGAuGuGGGGGGaCGGAAgGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 19822 0.69 0.534103
Target:  5'- cUCCUcCGCCCCCgCgucccccCCUccUCCGCCCa -3'
miRNA:   3'- uAGGAuGUGGGGG-Gac-----GGA--AGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 148341 0.69 0.543869
Target:  5'- gGUCCUugcCGCCCCCC-GCCU--CACCg -3'
miRNA:   3'- -UAGGAu--GUGGGGGGaCGGAagGUGGg -5'
5960 5' -59.6 NC_001806.1 + 72998 0.69 0.544849
Target:  5'- cUCg-GC-CCCCCCUGCCaaaaccaagaagaaaUCCACCCc -3'
miRNA:   3'- uAGgaUGuGGGGGGACGGa--------------AGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 74821 0.69 0.551724
Target:  5'- gGUCCUGCGCCCCCucccugaCUuugugggcuaaagGCCUgUCCGgCCg -3'
miRNA:   3'- -UAGGAUGUGGGGG-------GA-------------CGGA-AGGUgGG- -5'
5960 5' -59.6 NC_001806.1 + 23408 0.69 0.552709
Target:  5'- -gCCcGCGCCCCCCUccacgcccccgggGCCcgagcCCGCCCc -3'
miRNA:   3'- uaGGaUGUGGGGGGA-------------CGGaa---GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 57885 0.69 0.553693
Target:  5'- cAUCCU-CGCCCCCCgagcGCCc-CCGCUUg -3'
miRNA:   3'- -UAGGAuGUGGGGGGa---CGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 148284 0.69 0.553693
Target:  5'- uUCCU-CGCCCgCCC-GCCUauUCCuCCCu -3'
miRNA:   3'- uAGGAuGUGGG-GGGaCGGA--AGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 2297 0.69 0.553693
Target:  5'- cUCCggcgGC-CCCCCCgagGCCccgCCGCCg -3'
miRNA:   3'- uAGGa---UGuGGGGGGa--CGGaa-GGUGGg -5'
5960 5' -59.6 NC_001806.1 + 28916 0.69 0.56357
Target:  5'- uUCUUACccGCCCCCCUuuUUUCCccuaGCCCg -3'
miRNA:   3'- uAGGAUG--UGGGGGGAcgGAAGG----UGGG- -5'
5960 5' -59.6 NC_001806.1 + 143874 0.69 0.573492
Target:  5'- -aCCgACACCCCcaccccagucuCCUcGCCUUcucCCACCCa -3'
miRNA:   3'- uaGGaUGUGGGG-----------GGA-CGGAA---GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 119946 0.69 0.573492
Target:  5'- cGUCgUGCGCCCCCaccagCUGUCUcCCGCUg -3'
miRNA:   3'- -UAGgAUGUGGGGG-----GACGGAaGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 125717 0.69 0.573492
Target:  5'- cGUCC-GCGCCCCUCUGgCCaucggUCCccucugGCCCg -3'
miRNA:   3'- -UAGGaUGUGGGGGGAC-GGa----AGG------UGGG- -5'
5960 5' -59.6 NC_001806.1 + 45927 0.69 0.573492
Target:  5'- aGUCCgccugACACCUCCC-GCCguggCGCCCu -3'
miRNA:   3'- -UAGGa----UGUGGGGGGaCGGaag-GUGGG- -5'
5960 5' -59.6 NC_001806.1 + 106890 0.69 0.583455
Target:  5'- -gCCcGCGCCCCCCUcUCUUCUggcGCCUa -3'
miRNA:   3'- uaGGaUGUGGGGGGAcGGAAGG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.