miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5960 5' -59.6 NC_001806.1 + 979 0.68 0.643704
Target:  5'- -cCCU-CGCCCCCUcccGCCc-CCGCCCc -3'
miRNA:   3'- uaGGAuGUGGGGGGa--CGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 2297 0.69 0.553693
Target:  5'- cUCCggcgGC-CCCCCCgagGCCccgCCGCCg -3'
miRNA:   3'- uAGGa---UGuGGGGGGa--CGGaa-GGUGGg -5'
5960 5' -59.6 NC_001806.1 + 4116 0.68 0.623577
Target:  5'- cUCCgccucggGCGCCCCCCagagGCCcgggcggcugUCGCCCa -3'
miRNA:   3'- uAGGa------UGUGGGGGGa---CGGaa--------GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 5023 0.66 0.742503
Target:  5'- cGUCCc-CGCCCUCCUccgucuccgcGCC--CCACCCg -3'
miRNA:   3'- -UAGGauGUGGGGGGA----------CGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 5842 0.68 0.593451
Target:  5'- cGUCCccGgGCCCCCCgGUC--CCGCCCg -3'
miRNA:   3'- -UAGGa-UgUGGGGGGaCGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 5915 0.66 0.740589
Target:  5'- -gCCUugcCGCCCCCCcauugGCCggcgggcgggaCCGCCCc -3'
miRNA:   3'- uaGGAu--GUGGGGGGa----CGGaa---------GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 7504 0.66 0.760485
Target:  5'- ---gUAUGCCCCCCUGgcgagcccagaccCCUUCUcCCCa -3'
miRNA:   3'- uaggAUGUGGGGGGAC-------------GGAAGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 9632 0.68 0.643704
Target:  5'- -cCCU-UACCCgaggCCCUGCUUUuaaCCGCCCg -3'
miRNA:   3'- uaGGAuGUGGG----GGGACGGAA---GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 16967 0.68 0.643704
Target:  5'- cUCCUcCuuCCUCCUGCCcugUCC-CCCg -3'
miRNA:   3'- uAGGAuGugGGGGGACGGa--AGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 17139 0.67 0.683789
Target:  5'- cUCCcccggACGCCUCCgCUGCCggUCGCuCCa -3'
miRNA:   3'- uAGGa----UGUGGGGG-GACGGaaGGUG-GG- -5'
5960 5' -59.6 NC_001806.1 + 17661 0.67 0.673809
Target:  5'- -aCCca-GCCCCCCUcGCC-UCUACCa -3'
miRNA:   3'- uaGGaugUGGGGGGA-CGGaAGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 19734 0.7 0.486311
Target:  5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3'
miRNA:   3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 19778 0.7 0.486311
Target:  5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3'
miRNA:   3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 19822 0.69 0.534103
Target:  5'- cUCCUcCGCCCCCgCgucccccCCUccUCCGCCCa -3'
miRNA:   3'- uAGGAuGUGGGGG-Gac-----GGA--AGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 20157 0.66 0.752013
Target:  5'- -aCC--CGCCCCCCgccGCCcgggcCCGCCCc -3'
miRNA:   3'- uaGGauGUGGGGGGa--CGGaa---GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 21403 0.73 0.349479
Target:  5'- gAUCCcgACGCCcgaCCCCgcgGCCUcgCCGCCCc -3'
miRNA:   3'- -UAGGa-UGUGG---GGGGa--CGGAa-GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 21806 0.69 0.583455
Target:  5'- -cCCgggcggACGCCgCCCCcGCCcgggCCACCCc -3'
miRNA:   3'- uaGGa-----UGUGG-GGGGaCGGaa--GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 22677 0.66 0.752013
Target:  5'- gAUCCU-CGCCgCCCUggggcgGCUgUCCGCCg -3'
miRNA:   3'- -UAGGAuGUGG-GGGGa-----CGGaAGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 23113 0.65 0.767013
Target:  5'- -cCCUGgGCCCCgCgCUGCCgcgggacccgcgCCugCCg -3'
miRNA:   3'- uaGGAUgUGGGG-G-GACGGaa----------GGugGG- -5'
5960 5' -59.6 NC_001806.1 + 23197 0.67 0.679802
Target:  5'- -gCCUGCGCCCCCUgcuggcggcggcgGCCagCgCACCg -3'
miRNA:   3'- uaGGAUGUGGGGGGa------------CGGaaG-GUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.