miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5960 5' -59.6 NC_001806.1 + 151125 0.67 0.683789
Target:  5'- cUCCgGCGCCCCCU--CC--CCGCCCg -3'
miRNA:   3'- uAGGaUGUGGGGGGacGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 149126 0.67 0.663796
Target:  5'- aGUCCU--GCCCCCCUGCUg---GCCUc -3'
miRNA:   3'- -UAGGAugUGGGGGGACGGaaggUGGG- -5'
5960 5' -59.6 NC_001806.1 + 148937 0.67 0.693728
Target:  5'- cGUCCcccCGCCCCCCcacuucgGUCU-CCGCCUc -3'
miRNA:   3'- -UAGGau-GUGGGGGGa------CGGAaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 148341 0.69 0.543869
Target:  5'- gGUCCUugcCGCCCCCC-GCCU--CACCg -3'
miRNA:   3'- -UAGGAu--GUGGGGGGaCGGAagGUGGg -5'
5960 5' -59.6 NC_001806.1 + 148284 0.69 0.553693
Target:  5'- uUCCU-CGCCCgCCC-GCCUauUCCuCCCu -3'
miRNA:   3'- uAGGAuGUGGG-GGGaCGGA--AGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 147918 0.67 0.703617
Target:  5'- cGUCCg--GCCCCUCgGCCgccCCGCCUc -3'
miRNA:   3'- -UAGGaugUGGGGGGaCGGaa-GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 147548 0.66 0.761421
Target:  5'- -cCCgGC-CCCCCCgaGCCgcgcgCCACCg -3'
miRNA:   3'- uaGGaUGuGGGGGGa-CGGaa---GGUGGg -5'
5960 5' -59.6 NC_001806.1 + 147304 0.66 0.752013
Target:  5'- gGUCCcGgGCCCaCCCUgGCCgcgCCcCCCc -3'
miRNA:   3'- -UAGGaUgUGGG-GGGA-CGGaa-GGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 145984 0.67 0.703617
Target:  5'- -cCCUuuuggGCGCCCCguCCcGCCccgCCACCCc -3'
miRNA:   3'- uaGGA-----UGUGGGG--GGaCGGaa-GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 145930 0.66 0.761421
Target:  5'- -cCCccCACCCCUCcGCC--CCACCCc -3'
miRNA:   3'- uaGGauGUGGGGGGaCGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 144306 0.67 0.693728
Target:  5'- -cCCgcgACACCCCCC--CC--CCGCCCg -3'
miRNA:   3'- uaGGa--UGUGGGGGGacGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 144136 0.7 0.495716
Target:  5'- cUCCg--GCCCCCC-GCgagUCCACCCg -3'
miRNA:   3'- uAGGaugUGGGGGGaCGga-AGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 144110 1.09 0.001231
Target:  5'- cAUCCUACACCCCCCUGCCUUCCACCCu -3'
miRNA:   3'- -UAGGAUGUGGGGGGACGGAAGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 143874 0.69 0.573492
Target:  5'- -aCCgACACCCCcaccccagucuCCUcGCCUUcucCCACCCa -3'
miRNA:   3'- uaGGaUGUGGGG-----------GGA-CGGAA---GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 143644 0.67 0.69769
Target:  5'- cGUCCggcgcgcCGCCCCCC-GCCgcuaaaccccaucCCGCCCc -3'
miRNA:   3'- -UAGGau-----GUGGGGGGaCGGaa-----------GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 143445 0.7 0.505201
Target:  5'- cUCC--CACCCCCCgggccguguccuUGCUUUCCcCCCg -3'
miRNA:   3'- uAGGauGUGGGGGG------------ACGGAAGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 137810 0.66 0.711486
Target:  5'- -aCC-ACACCCCCCaguacgcggcccGCCUgCgGCCCg -3'
miRNA:   3'- uaGGaUGUGGGGGGa-----------CGGAaGgUGGG- -5'
5960 5' -59.6 NC_001806.1 + 136824 0.67 0.663796
Target:  5'- cGUUgUACACCCCCUgGCCcUCgguaUACCCc -3'
miRNA:   3'- -UAGgAUGUGGGGGGaCGGaAG----GUGGG- -5'
5960 5' -59.6 NC_001806.1 + 135802 0.66 0.713448
Target:  5'- gGUCCUG-GCCCgcagaCCCgcgGCUguUUCCGCCCu -3'
miRNA:   3'- -UAGGAUgUGGG-----GGGa--CGG--AAGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 133625 0.75 0.266293
Target:  5'- -cCUUGC-CCCCCaCUGCCUUCCGCg- -3'
miRNA:   3'- uaGGAUGuGGGGG-GACGGAAGGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.