Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5967 | 5' | -67.2 | NC_001806.1 | + | 293 | 0.68 | 0.283748 |
Target: 5'- ---cCCCCgCUCCCgCGGCCCcGCCCc-- -3' miRNA: 3'- augcGGGG-GAGGG-GCCGGG-CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 337 | 0.67 | 0.309757 |
Target: 5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3' miRNA: 3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 595 | 0.8 | 0.03604 |
Target: 5'- -cCGCCCCCUCCCCaGCCCcaGCCCUc- -3' miRNA: 3'- auGCGGGGGAGGGGcCGGG--CGGGAaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 624 | 0.76 | 0.07757 |
Target: 5'- --aGCCccagCCCUCCCCGGCCCcaGCCCUc- -3' miRNA: 3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 656 | 0.76 | 0.081581 |
Target: 5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3' miRNA: 3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 688 | 0.76 | 0.081581 |
Target: 5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3' miRNA: 3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 720 | 0.69 | 0.226324 |
Target: 5'- --gGCCccagCCCUCCCCGGCgCGUCCc-- -3' miRNA: 3'- augCGG----GGGAGGGGCCGgGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 846 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 880 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 914 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 948 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 982 | 0.72 | 0.147767 |
Target: 5'- -uCGCCCCCUCCCgccCCCGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgccGGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1015 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1049 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1083 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1117 | 0.68 | 0.296531 |
Target: 5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3' miRNA: 3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1144 | 0.68 | 0.303088 |
Target: 5'- -cCGCCCCUcgCCCCcuCCCGCCCc-- -3' miRNA: 3'- auGCGGGGGa-GGGGccGGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1236 | 0.7 | 0.211127 |
Target: 5'- aGCGCCCCg-CCCCGuCCCGgCCCg-- -3' miRNA: 3'- aUGCGGGGgaGGGGCcGGGC-GGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 1530 | 0.72 | 0.144225 |
Target: 5'- gGCGCaaaagUCCCUCCgCGGCCCGCgCCa-- -3' miRNA: 3'- aUGCG-----GGGGAGGgGCCGGGCG-GGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 4126 | 0.69 | 0.236963 |
Target: 5'- gGCGCCCCCcagaggCCCgGGCggcugUCGCCCa-- -3' miRNA: 3'- aUGCGGGGGa-----GGGgCCG-----GGCGGGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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