Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5967 | 5' | -67.2 | NC_001806.1 | + | 4480 | 0.66 | 0.352101 |
Target: 5'- gACGgaCCCCgCCCgaCGGCCCGCgCCUc- -3' miRNA: 3'- aUGCg-GGGGaGGG--GCCGGGCG-GGAaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 5523 | 0.67 | 0.337543 |
Target: 5'- --gGCCCCCcgcccCCCCGGCggGCCCa-- -3' miRNA: 3'- augCGGGGGa----GGGGCCGggCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 5612 | 0.69 | 0.253704 |
Target: 5'- cGCGgCCCgUuggucgaacCCCCGGcCCCGCCCa-- -3' miRNA: 3'- aUGCgGGGgA---------GGGGCC-GGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 5841 | 0.76 | 0.081581 |
Target: 5'- -cCGUCCCCgggccCCCCGGuCCCGCCCg-- -3' miRNA: 3'- auGCGGGGGa----GGGGCC-GGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 6821 | 0.66 | 0.359546 |
Target: 5'- aGCGUCCCCugcugcgcucUCCCgGGCugCUGCCCg-- -3' miRNA: 3'- aUGCGGGGG----------AGGGgCCG--GGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 9294 | 0.7 | 0.221158 |
Target: 5'- gACGUCCaCCUCgCCGGCggUCGCCCa-- -3' miRNA: 3'- aUGCGGG-GGAGgGGCCG--GGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 11118 | 0.68 | 0.265396 |
Target: 5'- cGgGCCCUCUCCCCGGCU--UCCUg- -3' miRNA: 3'- aUgCGGGGGAGGGGCCGGgcGGGAaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 19834 | 0.66 | 0.359546 |
Target: 5'- cGCGuccCCCCCUCCUCcGCCCaCCCa-- -3' miRNA: 3'- aUGC---GGGGGAGGGGcCGGGcGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 20159 | 0.78 | 0.054357 |
Target: 5'- -cCGCCCCCcgccgCCCgGGCCCGCCCc-- -3' miRNA: 3'- auGCGGGGGa----GGGgCCGGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 20294 | 0.68 | 0.271404 |
Target: 5'- gGCGgCCCCgCCCCcuuggggcGGuCCCGCCCg-- -3' miRNA: 3'- aUGCgGGGGaGGGG--------CC-GGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 21132 | 0.73 | 0.132109 |
Target: 5'- aGCGCCCCggCUCCCCgGGCCCcaccgacgggccgccGCCCa-- -3' miRNA: 3'- aUGCGGGG--GAGGGG-CCGGG---------------CGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 21421 | 0.68 | 0.277521 |
Target: 5'- cGCGgCCUCgccgCCCCGGaccCCCGCCUUUc -3' miRNA: 3'- aUGCgGGGGa---GGGGCC---GGGCGGGAAa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 21494 | 0.66 | 0.359546 |
Target: 5'- gACGCCgCCggcgaccgggCCCCGGCCCGgggCCg-- -3' miRNA: 3'- aUGCGGgGGa---------GGGGCCGGGCg--GGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 21834 | 0.72 | 0.162737 |
Target: 5'- cACcCCCCCUCUCCgaGGCCgCGCCCa-- -3' miRNA: 3'- aUGcGGGGGAGGGG--CCGG-GCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 22707 | 0.7 | 0.195893 |
Target: 5'- cGCGCCCgCCUCCCCcgcggggGGCgacgaccccgacgCCGCCCg-- -3' miRNA: 3'- aUGCGGG-GGAGGGG-------CCG-------------GGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 23293 | 0.66 | 0.352101 |
Target: 5'- aGCGCaagagUCCCggCCCGGCCCGgCCg-- -3' miRNA: 3'- aUGCG-----GGGGagGGGCCGGGCgGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 23391 | 0.81 | 0.034227 |
Target: 5'- cGCGcCCCCCUCCCCGcGCCCGCgCCc-- -3' miRNA: 3'- aUGC-GGGGGAGGGGC-CGGGCG-GGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 23423 | 0.78 | 0.057205 |
Target: 5'- cACGCCCCCggggCCCGaGCCCGCCCc-- -3' miRNA: 3'- aUGCGGGGGag--GGGC-CGGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 23462 | 0.7 | 0.211127 |
Target: 5'- gGCGCCCCgggCCgCCgcggcgcaGGCCCGCCCg-- -3' miRNA: 3'- aUGCGGGGga-GG-GG--------CCGGGCGGGaaa -5' |
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5967 | 5' | -67.2 | NC_001806.1 | + | 23494 | 0.69 | 0.253704 |
Target: 5'- cGCGCCCCgUggccgugucgCgCCGGCCCGCCg--- -3' miRNA: 3'- aUGCGGGGgA----------GgGGCCGGGCGGgaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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