Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5971 | 3' | -54 | NC_001806.1 | + | 404 | 1.08 | 0.004293 |
Target: 5'- cAGGUGAAACCAACAGAGCACGGCGCAc -3' miRNA: 3'- -UCCACUUUGGUUGUCUCGUGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 1511 | 0.76 | 0.466038 |
Target: 5'- cGGgcu--CCAGCAGGGCGCGgGCGCAa -3' miRNA: 3'- uCCacuuuGGUUGUCUCGUGC-CGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 1918 | 0.74 | 0.596859 |
Target: 5'- cGGcccGAGGCCAGCAccGUGCGGCGCAg -3' miRNA: 3'- uCCa--CUUUGGUUGUcuCGUGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 1944 | 0.69 | 0.842939 |
Target: 5'- nAGGUcccgcgccGCCGGcCAGcGCACGGCGCAc -3' miRNA: 3'- -UCCAcuu-----UGGUU-GUCuCGUGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 2612 | 0.7 | 0.79921 |
Target: 5'- cGGGUGGu-CCGugAGcucGGcCACGGCGCGc -3' miRNA: 3'- -UCCACUuuGGUugUC---UC-GUGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 2726 | 0.7 | 0.79921 |
Target: 5'- gGGGUcGggGCCcucGGCGG-GC-CGGCGCGa -3' miRNA: 3'- -UCCA-CuuUGG---UUGUCuCGuGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 3459 | 0.67 | 0.902181 |
Target: 5'- cGGccacGcgGCCGGCcuGGGCGCGGCGCc -3' miRNA: 3'- uCCa---CuuUGGUUGu-CUCGUGCCGCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 3718 | 0.7 | 0.79921 |
Target: 5'- ------cGCCAACAGgggcgcguaGGCGCGGCGCAg -3' miRNA: 3'- uccacuuUGGUUGUC---------UCGUGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 4662 | 0.7 | 0.771006 |
Target: 5'- cGGcuGGGCCGGCGG-GCGCGGCGaCAg -3' miRNA: 3'- uCCacUUUGGUUGUCuCGUGCCGC-GU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 4887 | 0.72 | 0.711362 |
Target: 5'- ---gGAGGCCAGCAGAGCcagcugucGCGGCGa- -3' miRNA: 3'- uccaCUUUGGUUGUCUCG--------UGCCGCgu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 5107 | 0.73 | 0.607299 |
Target: 5'- cGGUGggGCCcGgGGAGC-CGGgGCGc -3' miRNA: 3'- uCCACuuUGGuUgUCUCGuGCCgCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 10092 | 0.69 | 0.850307 |
Target: 5'- cAGGcGAGAcguCCAcguacucGCGGcGCACGGCGCGu -3' miRNA: 3'- -UCCaCUUU---GGU-------UGUCuCGUGCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 19096 | 0.66 | 0.941418 |
Target: 5'- uGGGcuUGggGCCGACGGGGUggGG-GCc -3' miRNA: 3'- -UCC--ACuuUGGUUGUCUCGugCCgCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 20186 | 0.72 | 0.689777 |
Target: 5'- ---cGggGCCGGCGcggagucGGGCACGGCGCc -3' miRNA: 3'- uccaCuuUGGUUGU-------CUCGUGCCGCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 20417 | 0.72 | 0.711362 |
Target: 5'- cGGG-GAcGGCCAACGGGcGCGCGGgGCu -3' miRNA: 3'- -UCCaCU-UUGGUUGUCU-CGUGCCgCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 20546 | 0.71 | 0.721537 |
Target: 5'- cGGUaauGAGauGCCAuGCGGGGCGgGGCGCGg -3' miRNA: 3'- uCCA---CUU--UGGU-UGUCUCGUgCCGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 20633 | 0.69 | 0.851115 |
Target: 5'- gGGGUucGACCAACGGGcCGCGGC-CAc -3' miRNA: 3'- -UCCAcuUUGGUUGUCUcGUGCCGcGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 20714 | 0.7 | 0.789955 |
Target: 5'- gGGGUGGGcccGCCGGgGGGGCGgGGgGCc -3' miRNA: 3'- -UCCACUU---UGGUUgUCUCGUgCCgCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 21208 | 0.68 | 0.866837 |
Target: 5'- cGGGUGggGCgcggaGACGGAGgAgGGCGgGg -3' miRNA: 3'- -UCCACuuUGg----UUGUCUCgUgCCGCgU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 21772 | 0.68 | 0.866837 |
Target: 5'- cGGGcGggGuCCGuc-GAGCGCGGCGCc -3' miRNA: 3'- -UCCaCuuU-GGUuguCUCGUGCCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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