miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5971 5' -52.6 NC_001806.1 + 140877 0.65 0.983175
Target:  5'- cGUCACGuagggccCGUCGguacagggcgggcCGUCAUCCG-CGCGCg -3'
miRNA:   3'- -CAGUGU-------GCAGU-------------GCAGUAGGUgGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 4317 0.66 0.981554
Target:  5'- ----gGCGUCGCGgccggcCA-CCGCCGCGCg -3'
miRNA:   3'- cagugUGCAGUGCa-----GUaGGUGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 82617 0.66 0.981554
Target:  5'- --aGCACG-CGCGUCAgCC-CCGCAg -3'
miRNA:   3'- cagUGUGCaGUGCAGUaGGuGGUGUg -5'
5971 5' -52.6 NC_001806.1 + 103933 0.66 0.979366
Target:  5'- gGUCACGCGgcugaCGCGgagCGUCCGuuGgGCg -3'
miRNA:   3'- -CAGUGUGCa----GUGCa--GUAGGUggUgUG- -5'
5971 5' -52.6 NC_001806.1 + 95095 0.66 0.974422
Target:  5'- aUCGCGCGUU-CGggagCCACCugGCg -3'
miRNA:   3'- cAGUGUGCAGuGCaguaGGUGGugUG- -5'
5971 5' -52.6 NC_001806.1 + 147722 0.66 0.974422
Target:  5'- cUCGCACG-CACGgggcCA-CgGCCGCGCg -3'
miRNA:   3'- cAGUGUGCaGUGCa---GUaGgUGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 110804 0.66 0.97165
Target:  5'- -gCAUAC-UCGCGUCuUCCGCCcCAUa -3'
miRNA:   3'- caGUGUGcAGUGCAGuAGGUGGuGUG- -5'
5971 5' -52.6 NC_001806.1 + 78602 0.67 0.968667
Target:  5'- --aGCACGUCGcCGUgccggccgccgcCAcCCACCGCACc -3'
miRNA:   3'- cagUGUGCAGU-GCA------------GUaGGUGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 22611 0.67 0.962047
Target:  5'- gGUCGC-CG-C-CGUCGccgCCGCCGCACc -3'
miRNA:   3'- -CAGUGuGCaGuGCAGUa--GGUGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 71719 0.67 0.962047
Target:  5'- -aCAUAUGaUCGCGggCAccCCACCGCACu -3'
miRNA:   3'- caGUGUGC-AGUGCa-GUa-GGUGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 78774 0.67 0.962047
Target:  5'- cUCACGCGcUCGCGggcCGgacgCCGCCuuGCGCg -3'
miRNA:   3'- cAGUGUGC-AGUGCa--GUa---GGUGG--UGUG- -5'
5971 5' -52.6 NC_001806.1 + 5405 0.67 0.958397
Target:  5'- gGUCcCGCGUCGgGUCGuggaUCCgugucggcaGCCGCGCu -3'
miRNA:   3'- -CAGuGUGCAGUgCAGU----AGG---------UGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 94491 0.67 0.954513
Target:  5'- cUCGCGCG--GCGcCA-CCGCCGCGCu -3'
miRNA:   3'- cAGUGUGCagUGCaGUaGGUGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 147642 0.68 0.950391
Target:  5'- -gCACACGgCGCG-CGUCCGCgGgGCg -3'
miRNA:   3'- caGUGUGCaGUGCaGUAGGUGgUgUG- -5'
5971 5' -52.6 NC_001806.1 + 1808 0.68 0.950391
Target:  5'- -gCACGCGguagcgCACGUUG-CCGCCGCGg -3'
miRNA:   3'- caGUGUGCa-----GUGCAGUaGGUGGUGUg -5'
5971 5' -52.6 NC_001806.1 + 127635 0.68 0.946027
Target:  5'- cGUCG---GUUugGUCGUCCGCCACc- -3'
miRNA:   3'- -CAGUgugCAGugCAGUAGGUGGUGug -5'
5971 5' -52.6 NC_001806.1 + 79675 0.68 0.941418
Target:  5'- gGUCGCGCG-CGCGcCGacaCCGCCGgGCa -3'
miRNA:   3'- -CAGUGUGCaGUGCaGUa--GGUGGUgUG- -5'
5971 5' -52.6 NC_001806.1 + 58648 0.68 0.941418
Target:  5'- cUCGC-CGUCggACGUCGUCguCCAUAUg -3'
miRNA:   3'- cAGUGuGCAG--UGCAGUAGguGGUGUG- -5'
5971 5' -52.6 NC_001806.1 + 1869 0.68 0.936562
Target:  5'- -gCGCGCGUgCGCGgCcUCCACgCGCGCg -3'
miRNA:   3'- caGUGUGCA-GUGCaGuAGGUG-GUGUG- -5'
5971 5' -52.6 NC_001806.1 + 83844 0.69 0.895585
Target:  5'- -aCGCAgcCGUCGC-UCA-CCACCGCGCu -3'
miRNA:   3'- caGUGU--GCAGUGcAGUaGGUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.