miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 3' -65 NC_001806.1 + 4 0.74 0.170096
Target:  5'- -cGCCGCCaccgcuuuaaagGGCCGCGCGCGac-CCCCg -3'
miRNA:   3'- gaCGGCGG------------CCGGUGCGCGUccaGGGG- -5'
5973 3' -65 NC_001806.1 + 1609 0.7 0.301192
Target:  5'- -gGCCGCa-GCgGCGCGCccAGG-CCCCa -3'
miRNA:   3'- gaCGGCGgcCGgUGCGCG--UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 1681 0.72 0.225188
Target:  5'- -gGCgCGCCGGgCgccaugGCGuCGguGGUCCCCg -3'
miRNA:   3'- gaCG-GCGGCCgG------UGC-GCguCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 1916 0.71 0.258037
Target:  5'- -cGCgGCCcgaGGCCagcaccguGCgGCGCAGGUCCCg -3'
miRNA:   3'- gaCGgCGG---CCGG--------UG-CGCGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 1953 0.71 0.282046
Target:  5'- -cGCCGCCGGCCA-GCGCAcGG-CgCa -3'
miRNA:   3'- gaCGGCGGCCGGUgCGCGU-CCaGgGg -5'
5973 3' -65 NC_001806.1 + 2012 0.66 0.534567
Target:  5'- gUGCUGCCGcGaCAC-CGCGGG-CCCg -3'
miRNA:   3'- gACGGCGGC-CgGUGcGCGUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 2079 0.76 0.118361
Target:  5'- -aGCCGCCGGUCGCcgGCGCuGGcgagcagCCCCa -3'
miRNA:   3'- gaCGGCGGCCGGUG--CGCGuCCa------GGGG- -5'
5973 3' -65 NC_001806.1 + 2123 0.66 0.534567
Target:  5'- -gGCC-CCGGCgAagGC-CAGGUCCCg -3'
miRNA:   3'- gaCGGcGGCCGgUg-CGcGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 2320 0.68 0.41164
Target:  5'- -cGCCGCCGGCC------AGGUCCUCg -3'
miRNA:   3'- gaCGGCGGCCGGugcgcgUCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 2405 0.72 0.225188
Target:  5'- -gGCCGCCaugcggcgcagcgGGCCcgagGCGCGCAGGgggccaaagaggcggCCCCc -3'
miRNA:   3'- gaCGGCGG-------------CCGG----UGCGCGUCCa--------------GGGG- -5'
5973 3' -65 NC_001806.1 + 2503 0.66 0.506932
Target:  5'- -cGCCGCacgCGGCCugGgCGgCGGGggcgggCCCg -3'
miRNA:   3'- gaCGGCG---GCCGGugC-GC-GUCCa-----GGGg -5'
5973 3' -65 NC_001806.1 + 2662 0.66 0.531779
Target:  5'- -gGgCGgCGGCCGCGgGCgccgccguguggcuGGG-CCCCg -3'
miRNA:   3'- gaCgGCgGCCGGUGCgCG--------------UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 2704 0.68 0.428153
Target:  5'- gCUGCCGCCGccaGCCGCccaGgGGGUCggggCCCu -3'
miRNA:   3'- -GACGGCGGC---CGGUGcg-CgUCCAG----GGG- -5'
5973 3' -65 NC_001806.1 + 2801 0.69 0.342447
Target:  5'- -cGCCGCgGGCUggGCGgGGGcgggcucgggCCCCg -3'
miRNA:   3'- gaCGGCGgCCGGugCGCgUCCa---------GGGG- -5'
5973 3' -65 NC_001806.1 + 3040 0.68 0.395529
Target:  5'- -gGCCGCC-GCCGCcagcaggggGCGCAGG-CUCUg -3'
miRNA:   3'- gaCGGCGGcCGGUG---------CGCGUCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 3096 0.73 0.19142
Target:  5'- -cGgCGgCGGCCGCggagcucggcagGCGCGGGUCCCg -3'
miRNA:   3'- gaCgGCgGCCGGUG------------CGCGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 3199 1.11 0.00037
Target:  5'- gCUGCCGCCGGCCACGCGCAGGUCCCCg -3'
miRNA:   3'- -GACGGCGGCCGGUGCGCGUCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 3304 0.67 0.479035
Target:  5'- gUGCgG-CGGCgGCGgggaagcggggccCGCGGGUCCCUc -3'
miRNA:   3'- gACGgCgGCCGgUGC-------------GCGUCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 3367 0.68 0.419022
Target:  5'- -gGCC-CCGGCCAgccccgggacggcCGC-CAGGUCgCCg -3'
miRNA:   3'- gaCGGcGGCCGGU-------------GCGcGUCCAGgGG- -5'
5973 3' -65 NC_001806.1 + 3465 0.72 0.241147
Target:  5'- -cGCgGCCGGCCugGgCGCGGcG-CCCg -3'
miRNA:   3'- gaCGgCGGCCGGugC-GCGUC-CaGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.