miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 3' -65 NC_001806.1 + 3199 1.11 0.00037
Target:  5'- gCUGCCGCCGGCCACGCGCAGGUCCCCg -3'
miRNA:   3'- -GACGGCGGCCGGUGCGCGUCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 147741 0.8 0.068428
Target:  5'- -gGCCGCgCGGggGCGCGCGGGUCCCg -3'
miRNA:   3'- gaCGGCG-GCCggUGCGCGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 94743 0.79 0.078385
Target:  5'- -cGCCGCCGGgcugucggacgccgaCCGCGCGCGGGcgcUCUCCg -3'
miRNA:   3'- gaCGGCGGCC---------------GGUGCGCGUCC---AGGGG- -5'
5973 3' -65 NC_001806.1 + 135579 0.78 0.085564
Target:  5'- -gGCCGCCaggucGGCCGCGCGCugcuggcgcuccaGGGcCCCCg -3'
miRNA:   3'- gaCGGCGG-----CCGGUGCGCG-------------UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 4322 0.78 0.090167
Target:  5'- -cGCgGCCGGCCAccgcCGCGCGGG-CCCg -3'
miRNA:   3'- gaCGgCGGCCGGU----GCGCGUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 2079 0.76 0.118361
Target:  5'- -aGCCGCCGGUCGCcgGCGCuGGcgagcagCCCCa -3'
miRNA:   3'- gaCGGCGGCCGGUG--CGCGuCCa------GGGG- -5'
5973 3' -65 NC_001806.1 + 57056 0.76 0.121297
Target:  5'- -gGCCcCCGGCUGCGUGcCGGGcUCCCCg -3'
miRNA:   3'- gaCGGcGGCCGGUGCGC-GUCC-AGGGG- -5'
5973 3' -65 NC_001806.1 + 9603 0.76 0.133731
Target:  5'- -cGCUGUCGGCCACGCGaauguacguGGG-CCCCu -3'
miRNA:   3'- gaCGGCGGCCGGUGCGCg--------UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 84093 0.75 0.143816
Target:  5'- gCUGCCGCggaGGCCcguCGCGCcacGGUCCgCCa -3'
miRNA:   3'- -GACGGCGg--CCGGu--GCGCGu--CCAGG-GG- -5'
5973 3' -65 NC_001806.1 + 5918 0.75 0.14733
Target:  5'- uUGCCGCCcccccauuGGCCgGCGgGCGGGaccgCCCCa -3'
miRNA:   3'- gACGGCGG--------CCGG-UGCgCGUCCa---GGGG- -5'
5973 3' -65 NC_001806.1 + 114556 0.74 0.158344
Target:  5'- cCUGCgCGaCCuGUCGCG-GCAGGUCCCCc -3'
miRNA:   3'- -GACG-GC-GGcCGGUGCgCGUCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 74611 0.74 0.166094
Target:  5'- gCUGUCGCCagaGGCCACGCGCAuGG-CCg- -3'
miRNA:   3'- -GACGGCGG---CCGGUGCGCGU-CCaGGgg -5'
5973 3' -65 NC_001806.1 + 4 0.74 0.170096
Target:  5'- -cGCCGCCaccgcuuuaaagGGCCGCGCGCGac-CCCCg -3'
miRNA:   3'- gaCGGCGG------------CCGGUGCGCGUccaGGGG- -5'
5973 3' -65 NC_001806.1 + 151714 0.74 0.170096
Target:  5'- -cGCCGCCaccgcuuuaaagGGCCGCGCGCGac-CCCCg -3'
miRNA:   3'- gaCGGCGG------------CCGGUGCGCGUccaGGGG- -5'
5973 3' -65 NC_001806.1 + 131776 0.74 0.182622
Target:  5'- -cGCCGCaggggagGGUCGCGCGCgcuuugcggAGGUCUCCg -3'
miRNA:   3'- gaCGGCGg------CCGGUGCGCG---------UCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 60485 0.74 0.184352
Target:  5'- uCUGCCGCCGGCCgccggcggcaccgagACGCGC--GUCUCg -3'
miRNA:   3'- -GACGGCGGCCGG---------------UGCGCGucCAGGGg -5'
5973 3' -65 NC_001806.1 + 5516 0.73 0.190971
Target:  5'- -gGCCGCCGGCCcccCGCccccccgGCGGGcccaCCCCg -3'
miRNA:   3'- gaCGGCGGCCGGu--GCG-------CGUCCa---GGGG- -5'
5973 3' -65 NC_001806.1 + 3096 0.73 0.19142
Target:  5'- -cGgCGgCGGCCGCggagcucggcagGCGCGGGUCCCg -3'
miRNA:   3'- gaCgGCgGCCGGUG------------CGCGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 73295 0.73 0.200588
Target:  5'- -cGCCGCCcuGGCC-CGCG-AGGUCgCCg -3'
miRNA:   3'- gaCGGCGG--CCGGuGCGCgUCCAGgGG- -5'
5973 3' -65 NC_001806.1 + 111660 0.73 0.210135
Target:  5'- aUGCCG-CGGCCAUgGUGCcgaccGGGUCCCUc -3'
miRNA:   3'- gACGGCgGCCGGUG-CGCG-----UCCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.