miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 3' -65 NC_001806.1 + 111660 0.73 0.210135
Target:  5'- aUGCCG-CGGCCAUgGUGCcgaccGGGUCCCUc -3'
miRNA:   3'- gACGGCgGCCGGUG-CGCG-----UCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 1681 0.72 0.225188
Target:  5'- -gGCgCGCCGGgCgccaugGCGuCGguGGUCCCCg -3'
miRNA:   3'- gaCG-GCGGCCgG------UGC-GCguCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 2405 0.72 0.225188
Target:  5'- -gGCCGCCaugcggcgcagcgGGCCcgagGCGCGCAGGgggccaaagaggcggCCCCc -3'
miRNA:   3'- gaCGGCGG-------------CCGG----UGCGCGUCCa--------------GGGG- -5'
5973 3' -65 NC_001806.1 + 85754 0.72 0.230406
Target:  5'- -aGCCGCgCGGCCACGuCGUccgggGGGUgCCa -3'
miRNA:   3'- gaCGGCG-GCCGGUGC-GCG-----UCCAgGGg -5'
5973 3' -65 NC_001806.1 + 4461 0.72 0.235725
Target:  5'- -gGCUGCCGGCgC-CGCGCucgacGGaCCCCg -3'
miRNA:   3'- gaCGGCGGCCG-GuGCGCGu----CCaGGGG- -5'
5973 3' -65 NC_001806.1 + 108045 0.72 0.235725
Target:  5'- -cGCCGCCGGgC-CGaCGgAGGgcgCCCCa -3'
miRNA:   3'- gaCGGCGGCCgGuGC-GCgUCCa--GGGG- -5'
5973 3' -65 NC_001806.1 + 3465 0.72 0.241147
Target:  5'- -cGCgGCCGGCCugGgCGCGGcG-CCCg -3'
miRNA:   3'- gaCGgCGGCCGGugC-GCGUC-CaGGGg -5'
5973 3' -65 NC_001806.1 + 144861 0.72 0.246672
Target:  5'- -cGCuCGCCGGCaCGCGaCGCgaaaaAGGcCCCCc -3'
miRNA:   3'- gaCG-GCGGCCG-GUGC-GCG-----UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 9990 0.72 0.246672
Target:  5'- -gGCCGCCuGCCACGC-CAG--CCCCg -3'
miRNA:   3'- gaCGGCGGcCGGUGCGcGUCcaGGGG- -5'
5973 3' -65 NC_001806.1 + 1916 0.71 0.258037
Target:  5'- -cGCgGCCcgaGGCCagcaccguGCgGCGCAGGUCCCg -3'
miRNA:   3'- gaCGgCGG---CCGG--------UG-CGCGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 21931 0.71 0.258037
Target:  5'- -gGUgGCCGGCCGCGaCGCcacGGG-CCCUu -3'
miRNA:   3'- gaCGgCGGCCGGUGC-GCG---UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 147667 0.71 0.266245
Target:  5'- -gGCgGCCGGCUccgccccgggggccgGgGCGCGGGggcgggCCCCg -3'
miRNA:   3'- gaCGgCGGCCGG---------------UgCGCGUCCa-----GGGG- -5'
5973 3' -65 NC_001806.1 + 56844 0.71 0.269827
Target:  5'- -cGCCGCggccagggCGGCCGCG-GCGGGcCCaCCg -3'
miRNA:   3'- gaCGGCG--------GCCGGUGCgCGUCCaGG-GG- -5'
5973 3' -65 NC_001806.1 + 142036 0.71 0.269827
Target:  5'- -cGCCGCCGGCCcugacgaGCGaCAGGcggccgguucgCCCCc -3'
miRNA:   3'- gaCGGCGGCCGGug-----CGC-GUCCa----------GGGG- -5'
5973 3' -65 NC_001806.1 + 22614 0.71 0.272236
Target:  5'- -cGCCGCCGucGCCGCcgccgcaccgggcgaGCGCGcGGUgCCCg -3'
miRNA:   3'- gaCGGCGGC--CGGUG---------------CGCGU-CCAgGGG- -5'
5973 3' -65 NC_001806.1 + 67365 0.71 0.275882
Target:  5'- -gGCCGCCccCC-CGCGCAuGGUgCCCCg -3'
miRNA:   3'- gaCGGCGGccGGuGCGCGU-CCA-GGGG- -5'
5973 3' -65 NC_001806.1 + 3954 0.71 0.275882
Target:  5'- -cGUCcCCGGggaCCACGCGCGGGUucuggagccaCCCCa -3'
miRNA:   3'- gaCGGcGGCC---GGUGCGCGUCCA----------GGGG- -5'
5973 3' -65 NC_001806.1 + 31089 0.71 0.275882
Target:  5'- aUGgCGacCCGGCUGCGgGCcgcGGUCCCCg -3'
miRNA:   3'- gACgGC--GGCCGGUGCgCGu--CCAGGGG- -5'
5973 3' -65 NC_001806.1 + 1953 0.71 0.282046
Target:  5'- -cGCCGCCGGCCA-GCGCAcGG-CgCa -3'
miRNA:   3'- gaCGGCGGCCGGUgCGCGU-CCaGgGg -5'
5973 3' -65 NC_001806.1 + 38403 0.71 0.282046
Target:  5'- uCU-CCGCCGGCU-CGgGgGGGUCCUCg -3'
miRNA:   3'- -GAcGGCGGCCGGuGCgCgUCCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.