miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 3' -65 NC_001806.1 + 85910 0.66 0.51608
Target:  5'- -cGCCGUgGGCaaugGCGUauGCGGGaUCCUCg -3'
miRNA:   3'- gaCGGCGgCCGg---UGCG--CGUCC-AGGGG- -5'
5973 3' -65 NC_001806.1 + 27529 0.66 0.515162
Target:  5'- -cGCCucCCGcGCCGCGCGUaaccacuccccugGGGUUCCg -3'
miRNA:   3'- gaCGGc-GGC-CGGUGCGCG-------------UCCAGGGg -5'
5973 3' -65 NC_001806.1 + 84858 0.66 0.515162
Target:  5'- -cGCCGgCGGUCGCGCuccucugcggccgGCGGGaCUCUg -3'
miRNA:   3'- gaCGGCgGCCGGUGCG-------------CGUCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 3834 0.66 0.506932
Target:  5'- -aGCgGCCGGCCGCcaugGCGUAG--CCCa -3'
miRNA:   3'- gaCGgCGGCCGGUG----CGCGUCcaGGGg -5'
5973 3' -65 NC_001806.1 + 2503 0.66 0.506932
Target:  5'- -cGCCGCacgCGGCCugGgCGgCGGGggcgggCCCg -3'
miRNA:   3'- gaCGGCG---GCCGGugC-GC-GUCCa-----GGGg -5'
5973 3' -65 NC_001806.1 + 12125 0.66 0.506932
Target:  5'- gUGCUGUCGGUCGCGCGacaCAGGgcgaaUgCCa -3'
miRNA:   3'- gACGGCGGCCGGUGCGC---GUCCa----GgGG- -5'
5973 3' -65 NC_001806.1 + 75406 0.66 0.506932
Target:  5'- gCUGCCGCCGaCCuuguCGUcCAGGUgCgCCg -3'
miRNA:   3'- -GACGGCGGCcGGu---GCGcGUCCAgG-GG- -5'
5973 3' -65 NC_001806.1 + 76952 0.66 0.506932
Target:  5'- -gGUCGCuuCGGCCGCGUucGCGGGggggCCUg -3'
miRNA:   3'- gaCGGCG--GCCGGUGCG--CGUCCa---GGGg -5'
5973 3' -65 NC_001806.1 + 52839 0.66 0.506932
Target:  5'- -cGCCucCCGGCCcguaACGuCGCGGGaCCCg -3'
miRNA:   3'- gaCGGc-GGCCGG----UGC-GCGUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 58539 0.66 0.506021
Target:  5'- gCUGCgGCCucGUCAgGCGCaacugaacgucggGGGUUCCCu -3'
miRNA:   3'- -GACGgCGGc-CGGUgCGCG-------------UCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 24332 0.66 0.497855
Target:  5'- gUGCUgGCCucgGGCCGCGUGUucggcccggGGGUCUUCg -3'
miRNA:   3'- gACGG-CGG---CCGGUGCGCG---------UCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 12782 0.66 0.497855
Target:  5'- aCUGCCGCCcaCCGCGCcggcgauCAGG-CCCa -3'
miRNA:   3'- -GACGGCGGccGGUGCGc------GUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 20364 0.66 0.497855
Target:  5'- -gGCCGCCcGCCGuCcCGUuGGUCCCg -3'
miRNA:   3'- gaCGGCGGcCGGU-GcGCGuCCAGGGg -5'
5973 3' -65 NC_001806.1 + 42008 0.66 0.497855
Target:  5'- gCUGCUccguGCUGGCCGCGggguugggguCGUGGGUCgUCa -3'
miRNA:   3'- -GACGG----CGGCCGGUGC----------GCGUCCAGgGG- -5'
5973 3' -65 NC_001806.1 + 89907 0.66 0.497855
Target:  5'- -cGuuGCCGGCCGC-CG-GGGUucaucggcgaCCCCg -3'
miRNA:   3'- gaCggCGGCCGGUGcGCgUCCA----------GGGG- -5'
5973 3' -65 NC_001806.1 + 118119 0.66 0.497855
Target:  5'- -cGUCGCCGGucucCCugGC-CuGGcCCCCg -3'
miRNA:   3'- gaCGGCGGCC----GGugCGcGuCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 28682 0.66 0.497855
Target:  5'- -aGCCGCCcGCCauauuugggggACGcCGUGGGaCCCCc -3'
miRNA:   3'- gaCGGCGGcCGG-----------UGC-GCGUCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 65359 0.66 0.497855
Target:  5'- --cCCGCCGaGCgACGUG-GGGUUCCCc -3'
miRNA:   3'- gacGGCGGC-CGgUGCGCgUCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 118748 0.66 0.48885
Target:  5'- -gGCCGCgggaauccccUGGCCGCccugauGCGCGGccgCCCCg -3'
miRNA:   3'- gaCGGCG----------GCCGGUG------CGCGUCca-GGGG- -5'
5973 3' -65 NC_001806.1 + 100114 0.66 0.48885
Target:  5'- gCUGaCCGCCcGCCugGCgguccgcgGCuauGGcCCCCa -3'
miRNA:   3'- -GAC-GGCGGcCGGugCG--------CGu--CCaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.