miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 5' -59.2 NC_001806.1 + 3235 1.03 0.002737
Target:  5'- cAUGAGCACCAGCGCGUCGCGCACGAAc -3'
miRNA:   3'- -UACUCGUGGUCGCGCAGCGCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 1773 0.79 0.144615
Target:  5'- cAUGGGCACCGGCGUGUCcgggccgaagcgcguGCGCACGc- -3'
miRNA:   3'- -UACUCGUGGUCGCGCAG---------------CGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 84854 0.75 0.266236
Target:  5'- -gGAGCGCCGGCG-GUCGCGCuccucuGCGGc -3'
miRNA:   3'- uaCUCGUGGUCGCgCAGCGCG------UGCUu -5'
5973 5' -59.2 NC_001806.1 + 67050 0.74 0.272613
Target:  5'- ---cGCAUCGGCgGCGUCGCGCGCGu- -3'
miRNA:   3'- uacuCGUGGUCG-CGCAGCGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 100890 0.73 0.328064
Target:  5'- -cGAucGCGCaCAGCGCGaCGUGCGCGAAc -3'
miRNA:   3'- uaCU--CGUG-GUCGCGCaGCGCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 140689 0.71 0.417163
Target:  5'- --cGGCGCCcGCGUGcCGCGCugGAAc -3'
miRNA:   3'- uacUCGUGGuCGCGCaGCGCGugCUU- -5'
5973 5' -59.2 NC_001806.1 + 133668 0.71 0.425967
Target:  5'- -aGAGCACUacuggcGGCGCGUCGUGCGugucuguccCGGAg -3'
miRNA:   3'- uaCUCGUGG------UCGCGCAGCGCGU---------GCUU- -5'
5973 5' -59.2 NC_001806.1 + 112685 0.71 0.434882
Target:  5'- -aGAGCGCCccccagacgacGCGCGU-GCGCGCGGAu -3'
miRNA:   3'- uaCUCGUGGu----------CGCGCAgCGCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 62850 0.71 0.443903
Target:  5'- gGUGGGCAUCAGCGCGacaaacuggugUUGCGCAgGc- -3'
miRNA:   3'- -UACUCGUGGUCGCGC-----------AGCGCGUgCuu -5'
5973 5' -59.2 NC_001806.1 + 1867 0.7 0.462254
Target:  5'- -aGGcGCGCguGCGCGgccuccaCGCGCGCGAAg -3'
miRNA:   3'- uaCU-CGUGguCGCGCa------GCGCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 125687 0.7 0.471578
Target:  5'- -cGAGCGCCAccugcGCGgGUUGCuGCGCGGc -3'
miRNA:   3'- uaCUCGUGGU-----CGCgCAGCG-CGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 26797 0.7 0.471578
Target:  5'- -gGAGCACCuGGCGCGcCuGCGCcuGCGAc -3'
miRNA:   3'- uaCUCGUGG-UCGCGCaG-CGCG--UGCUu -5'
5973 5' -59.2 NC_001806.1 + 53665 0.7 0.50978
Target:  5'- --cAGCcCCAGCGCGUUGCGgGuCGAAg -3'
miRNA:   3'- uacUCGuGGUCGCGCAGCGCgU-GCUU- -5'
5973 5' -59.2 NC_001806.1 + 134784 0.69 0.519536
Target:  5'- --cGGCACCcaGGCGCGacgucgaCGCGCGCGAu -3'
miRNA:   3'- uacUCGUGG--UCGCGCa------GCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 78333 0.69 0.519536
Target:  5'- -cGAGCugggaACCgAGCGCGgcgcCGCGCugGGAa -3'
miRNA:   3'- uaCUCG-----UGG-UCGCGCa---GCGCGugCUU- -5'
5973 5' -59.2 NC_001806.1 + 81345 0.69 0.539259
Target:  5'- -cGGGCcgcaaccaggcgGCCGGgGCGUCGCcCGCGAAc -3'
miRNA:   3'- uaCUCG------------UGGUCgCGCAGCGcGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 41413 0.69 0.559231
Target:  5'- cGUGAGCcgccugcCCAGCGCGcCGUGguCGGGg -3'
miRNA:   3'- -UACUCGu------GGUCGCGCaGCGCguGCUU- -5'
5973 5' -59.2 NC_001806.1 + 20174 0.69 0.569296
Target:  5'- -cGGGCccgcccccgggGCCGGCGCGgagUCGgGCACGGc -3'
miRNA:   3'- uaCUCG-----------UGGUCGCGC---AGCgCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 122359 0.68 0.579404
Target:  5'- gGUGGcGCGCUGGCGgaaGUgGCGCACGGc -3'
miRNA:   3'- -UACU-CGUGGUCGCg--CAgCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 51258 0.68 0.579404
Target:  5'- cAUGcAGCGCCGGaCGCG-CG-GCGCGAGc -3'
miRNA:   3'- -UAC-UCGUGGUC-GCGCaGCgCGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.