miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 5' -59.2 NC_001806.1 + 1773 0.79 0.144615
Target:  5'- cAUGGGCACCGGCGUGUCcgggccgaagcgcguGCGCACGc- -3'
miRNA:   3'- -UACUCGUGGUCGCGCAG---------------CGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 1867 0.7 0.462254
Target:  5'- -aGGcGCGCguGCGCGgccuccaCGCGCGCGAAg -3'
miRNA:   3'- uaCU-CGUGguCGCGCa------GCGCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 2029 0.66 0.750792
Target:  5'- -cGGGCccgucggcggGCCAGuCGCaggCGCGCACGGu -3'
miRNA:   3'- uaCUCG----------UGGUC-GCGca-GCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 2530 0.67 0.691478
Target:  5'- -cGGGC-CCGGCGCacCGCGCgGCGAu -3'
miRNA:   3'- uaCUCGuGGUCGCGcaGCGCG-UGCUu -5'
5973 5' -59.2 NC_001806.1 + 3235 1.03 0.002737
Target:  5'- cAUGAGCACCAGCGCGUCGCGCACGAAc -3'
miRNA:   3'- -UACUCGUGGUCGCGCAGCGCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 3609 0.66 0.711543
Target:  5'- -cGGGCACC-GCGCGcUCGCccgGUGCGGc -3'
miRNA:   3'- uaCUCGUGGuCGCGC-AGCG---CGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 6042 0.66 0.731339
Target:  5'- -cGAGCACUGGCGC--CGUGCcCGAc -3'
miRNA:   3'- uaCUCGUGGUCGCGcaGCGCGuGCUu -5'
5973 5' -59.2 NC_001806.1 + 15748 0.66 0.70154
Target:  5'- -gGAGCGgUAGCGCGagGUgagGCGCGAu -3'
miRNA:   3'- uaCUCGUgGUCGCGCagCG---CGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 20174 0.69 0.569296
Target:  5'- -cGGGCccgcccccgggGCCGGCGCGgagUCGgGCACGGc -3'
miRNA:   3'- uaCUCG-----------UGGUCGCGC---AGCgCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 21966 0.67 0.650825
Target:  5'- -cGGGCAgccCCGGCGgGUCGaGCugGAc -3'
miRNA:   3'- uaCUCGU---GGUCGCgCAGCgCGugCUu -5'
5973 5' -59.2 NC_001806.1 + 22984 0.66 0.72148
Target:  5'- cGUGGcuGCGCgAGCuGCGguUCGUGCGCGAc -3'
miRNA:   3'- -UACU--CGUGgUCG-CGC--AGCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 25871 0.67 0.640603
Target:  5'- -cGGGCcccccGCgGGCGCG-CGCGCGCGc- -3'
miRNA:   3'- uaCUCG-----UGgUCGCGCaGCGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 25919 0.66 0.72148
Target:  5'- -cGGGCGgC-GUGCG-CGCGCGCGGc -3'
miRNA:   3'- uaCUCGUgGuCGCGCaGCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 26797 0.7 0.471578
Target:  5'- -gGAGCACCuGGCGCGcCuGCGCcuGCGAc -3'
miRNA:   3'- uaCUCGUGG-UCGCGCaG-CGCG--UGCUu -5'
5973 5' -59.2 NC_001806.1 + 30388 0.68 0.579404
Target:  5'- -cGGGCGCguGCGacgGUgGCGCGCGGc -3'
miRNA:   3'- uaCUCGUGguCGCg--CAgCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 41413 0.69 0.559231
Target:  5'- cGUGAGCcgccugcCCAGCGCGcCGUGguCGGGg -3'
miRNA:   3'- -UACUCGu------GGUCGCGCaGCGCguGCUU- -5'
5973 5' -59.2 NC_001806.1 + 42773 0.68 0.579404
Target:  5'- -cGuGCGCCAGgGCGUCcuguaGCGCgGCGAc -3'
miRNA:   3'- uaCuCGUGGUCgCGCAG-----CGCG-UGCUu -5'
5973 5' -59.2 NC_001806.1 + 51258 0.68 0.579404
Target:  5'- cAUGcAGCGCCGGaCGCG-CG-GCGCGAGc -3'
miRNA:   3'- -UAC-UCGUGGUC-GCGCaGCgCGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 53665 0.7 0.50978
Target:  5'- --cAGCcCCAGCGCGUUGCGgGuCGAAg -3'
miRNA:   3'- uacUCGuGGUCGCGCAGCGCgU-GCUU- -5'
5973 5' -59.2 NC_001806.1 + 62850 0.71 0.443903
Target:  5'- gGUGGGCAUCAGCGCGacaaacuggugUUGCGCAgGc- -3'
miRNA:   3'- -UACUCGUGGUCGCGC-----------AGCGCGUgCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.