miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 3' -57.6 NC_001806.1 + 34003 0.66 0.844545
Target:  5'- gGGCGGggGCGUGggCGGGG-GUGCUc -3'
miRNA:   3'- -UCGUCggCGCACuaGUCCCgCAUGAc -5'
5974 3' -57.6 NC_001806.1 + 29957 0.66 0.844545
Target:  5'- cGCgAGCCGCG-GcgCcgcggGGGGCGU-CUGg -3'
miRNA:   3'- uCG-UCGGCGCaCuaG-----UCCCGCAuGAC- -5'
5974 3' -57.6 NC_001806.1 + 147225 0.66 0.844545
Target:  5'- aGGCGGCCcccGCGggGGUCGGGGCc----- -3'
miRNA:   3'- -UCGUCGG---CGCa-CUAGUCCCGcaugac -5'
5974 3' -57.6 NC_001806.1 + 41427 0.66 0.836421
Target:  5'- -cCAGCgCGcCGUGGUCGGGGUGcGCc- -3'
miRNA:   3'- ucGUCG-GC-GCACUAGUCCCGCaUGac -5'
5974 3' -57.6 NC_001806.1 + 119031 0.66 0.828113
Target:  5'- uGGCGGCgcugcgccuUGCGUGGggcUCGGGGgCGaGCUGu -3'
miRNA:   3'- -UCGUCG---------GCGCACU---AGUCCC-GCaUGAC- -5'
5974 3' -57.6 NC_001806.1 + 148166 0.66 0.819627
Target:  5'- cGGCGGCgccucUGCGUGGgggggcgCGGGGCGUccgGCg- -3'
miRNA:   3'- -UCGUCG-----GCGCACUa------GUCCCGCA---UGac -5'
5974 3' -57.6 NC_001806.1 + 3099 0.66 0.810972
Target:  5'- cGGCGGCCGCG-GAgcucggCAGGcGCGg---- -3'
miRNA:   3'- -UCGUCGGCGCaCUa-----GUCC-CGCaugac -5'
5974 3' -57.6 NC_001806.1 + 150716 0.66 0.810972
Target:  5'- aGGCGGcCCGCccuGUgAGGGCGgGCUGg -3'
miRNA:   3'- -UCGUC-GGCGcacUAgUCCCGCaUGAC- -5'
5974 3' -57.6 NC_001806.1 + 4833 0.67 0.802155
Target:  5'- cGGCgaGGCCGCGgGGUC-GGGCGU-Cg- -3'
miRNA:   3'- -UCG--UCGGCGCaCUAGuCCCGCAuGac -5'
5974 3' -57.6 NC_001806.1 + 42563 0.67 0.784072
Target:  5'- uGGUaaGGCCGCGUuGUCccAGGGaCGUGCg- -3'
miRNA:   3'- -UCG--UCGGCGCAcUAG--UCCC-GCAUGac -5'
5974 3' -57.6 NC_001806.1 + 103157 0.67 0.765445
Target:  5'- cGGCAGCCGCuGUGcgCuGGGCcuGUAg-- -3'
miRNA:   3'- -UCGUCGGCG-CACuaGuCCCG--CAUgac -5'
5974 3' -57.6 NC_001806.1 + 45328 0.67 0.765445
Target:  5'- gGGCGGgCGCGauggGAUCGgGGGCGcGCg- -3'
miRNA:   3'- -UCGUCgGCGCa---CUAGU-CCCGCaUGac -5'
5974 3' -57.6 NC_001806.1 + 22665 0.68 0.736645
Target:  5'- cGGC-GCCGCGggGAUCcucgccgcccuGGGGCG-GCUGu -3'
miRNA:   3'- -UCGuCGGCGCa-CUAG-----------UCCCGCaUGAC- -5'
5974 3' -57.6 NC_001806.1 + 3003 0.68 0.735669
Target:  5'- cGGCGGCCGCcagcgcGUCGGcGGCGUccggugcGCUGg -3'
miRNA:   3'- -UCGUCGGCGcac---UAGUC-CCGCA-------UGAC- -5'
5974 3' -57.6 NC_001806.1 + 144537 0.68 0.70703
Target:  5'- cGCGGCCGUGccGAUCGcGGGUGgUGCg- -3'
miRNA:   3'- uCGUCGGCGCa-CUAGU-CCCGC-AUGac -5'
5974 3' -57.6 NC_001806.1 + 147768 0.68 0.69702
Target:  5'- cGCGGCCGCGgacgcgggGGgccCGGGGCGggggGCg- -3'
miRNA:   3'- uCGUCGGCGCa-------CUa--GUCCCGCa---UGac -5'
5974 3' -57.6 NC_001806.1 + 84878 0.68 0.69702
Target:  5'- uGCGGCCgGCGgGAcUCuGGGCGUGgUGc -3'
miRNA:   3'- uCGUCGG-CGCaCU-AGuCCCGCAUgAC- -5'
5974 3' -57.6 NC_001806.1 + 66237 0.68 0.69702
Target:  5'- gAGC-GuuGUGUGggCGGGGCGUuuGCUa -3'
miRNA:   3'- -UCGuCggCGCACuaGUCCCGCA--UGAc -5'
5974 3' -57.6 NC_001806.1 + 95479 0.69 0.676848
Target:  5'- aAGCGGCCGCG-GAcgugCGGGaGCGacggcgGCUGu -3'
miRNA:   3'- -UCGUCGGCGCaCUa---GUCC-CGCa-----UGAC- -5'
5974 3' -57.6 NC_001806.1 + 22184 0.69 0.656529
Target:  5'- cGGCGGCCGUGUGGgcgcccgagCuGGGCG-ACg- -3'
miRNA:   3'- -UCGUCGGCGCACUa--------GuCCCGCaUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.