miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 3' -57.6 NC_001806.1 + 4014 1.07 0.002451
Target:  5'- cAGCAGCCGCGUGAUCAGGGCGUACUGc -3'
miRNA:   3'- -UCGUCGGCGCACUAGUCCCGCAUGAC- -5'
5974 3' -57.6 NC_001806.1 + 92902 0.81 0.157354
Target:  5'- uGCGGCCGCGUGGUCcgcgcagggcGGGGCGggcCUGg -3'
miRNA:   3'- uCGUCGGCGCACUAG----------UCCCGCau-GAC- -5'
5974 3' -57.6 NC_001806.1 + 5433 0.77 0.269106
Target:  5'- cGGCAGCCGCGcuccguguggacGAUCGGGGCGUcCUc -3'
miRNA:   3'- -UCGUCGGCGCa-----------CUAGUCCCGCAuGAc -5'
5974 3' -57.6 NC_001806.1 + 53880 0.75 0.340343
Target:  5'- uGGCAGCCGCGcgggGAUCAGGGuCGccgggGCg- -3'
miRNA:   3'- -UCGUCGGCGCa---CUAGUCCC-GCa----UGac -5'
5974 3' -57.6 NC_001806.1 + 42233 0.73 0.44033
Target:  5'- cGGCcGCCGCGgcccCGcGGGCGUACUGg -3'
miRNA:   3'- -UCGuCGGCGCacuaGU-CCCGCAUGAC- -5'
5974 3' -57.6 NC_001806.1 + 142193 0.73 0.449395
Target:  5'- gGGCGGCgGCGUGGUgaGGGGCuucgGCUGc -3'
miRNA:   3'- -UCGUCGgCGCACUAg-UCCCGca--UGAC- -5'
5974 3' -57.6 NC_001806.1 + 91179 0.72 0.505807
Target:  5'- cGCGGcCCGCGccaacgccGUCGGGGCGUAcCUGg -3'
miRNA:   3'- uCGUC-GGCGCac------UAGUCCCGCAU-GAC- -5'
5974 3' -57.6 NC_001806.1 + 22184 0.69 0.656529
Target:  5'- cGGCGGCCGUGUGGgcgcccgagCuGGGCG-ACg- -3'
miRNA:   3'- -UCGUCGGCGCACUa--------GuCCCGCaUGac -5'
5974 3' -57.6 NC_001806.1 + 95479 0.69 0.676848
Target:  5'- aAGCGGCCGCG-GAcgugCGGGaGCGacggcgGCUGu -3'
miRNA:   3'- -UCGUCGGCGCaCUa---GUCC-CGCa-----UGAC- -5'
5974 3' -57.6 NC_001806.1 + 66237 0.68 0.69702
Target:  5'- gAGC-GuuGUGUGggCGGGGCGUuuGCUa -3'
miRNA:   3'- -UCGuCggCGCACuaGUCCCGCA--UGAc -5'
5974 3' -57.6 NC_001806.1 + 84878 0.68 0.69702
Target:  5'- uGCGGCCgGCGgGAcUCuGGGCGUGgUGc -3'
miRNA:   3'- uCGUCGG-CGCaCU-AGuCCCGCAUgAC- -5'
5974 3' -57.6 NC_001806.1 + 147768 0.68 0.69702
Target:  5'- cGCGGCCGCGgacgcgggGGgccCGGGGCGggggGCg- -3'
miRNA:   3'- uCGUCGGCGCa-------CUa--GUCCCGCa---UGac -5'
5974 3' -57.6 NC_001806.1 + 144537 0.68 0.70703
Target:  5'- cGCGGCCGUGccGAUCGcGGGUGgUGCg- -3'
miRNA:   3'- uCGUCGGCGCa-CUAGU-CCCGC-AUGac -5'
5974 3' -57.6 NC_001806.1 + 3003 0.68 0.735669
Target:  5'- cGGCGGCCGCcagcgcGUCGGcGGCGUccggugcGCUGg -3'
miRNA:   3'- -UCGUCGGCGcac---UAGUC-CCGCA-------UGAC- -5'
5974 3' -57.6 NC_001806.1 + 22665 0.68 0.736645
Target:  5'- cGGC-GCCGCGggGAUCcucgccgcccuGGGGCG-GCUGu -3'
miRNA:   3'- -UCGuCGGCGCa-CUAG-----------UCCCGCaUGAC- -5'
5974 3' -57.6 NC_001806.1 + 103157 0.67 0.765445
Target:  5'- cGGCAGCCGCuGUGcgCuGGGCcuGUAg-- -3'
miRNA:   3'- -UCGUCGGCG-CACuaGuCCCG--CAUgac -5'
5974 3' -57.6 NC_001806.1 + 45328 0.67 0.765445
Target:  5'- gGGCGGgCGCGauggGAUCGgGGGCGcGCg- -3'
miRNA:   3'- -UCGUCgGCGCa---CUAGU-CCCGCaUGac -5'
5974 3' -57.6 NC_001806.1 + 42563 0.67 0.784072
Target:  5'- uGGUaaGGCCGCGUuGUCccAGGGaCGUGCg- -3'
miRNA:   3'- -UCG--UCGGCGCAcUAG--UCCC-GCAUGac -5'
5974 3' -57.6 NC_001806.1 + 4833 0.67 0.802155
Target:  5'- cGGCgaGGCCGCGgGGUC-GGGCGU-Cg- -3'
miRNA:   3'- -UCG--UCGGCGCaCUAGuCCCGCAuGac -5'
5974 3' -57.6 NC_001806.1 + 3099 0.66 0.810972
Target:  5'- cGGCGGCCGCG-GAgcucggCAGGcGCGg---- -3'
miRNA:   3'- -UCGUCGGCGCaCUa-----GUCC-CGCaugac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.