Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5974 | 3' | -57.6 | NC_001806.1 | + | 150716 | 0.66 | 0.810972 |
Target: 5'- aGGCGGcCCGCccuGUgAGGGCGgGCUGg -3' miRNA: 3'- -UCGUC-GGCGcacUAgUCCCGCaUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 148166 | 0.66 | 0.819627 |
Target: 5'- cGGCGGCgccucUGCGUGGgggggcgCGGGGCGUccgGCg- -3' miRNA: 3'- -UCGUCG-----GCGCACUa------GUCCCGCA---UGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 119031 | 0.66 | 0.828113 |
Target: 5'- uGGCGGCgcugcgccuUGCGUGGggcUCGGGGgCGaGCUGu -3' miRNA: 3'- -UCGUCG---------GCGCACU---AGUCCC-GCaUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 41427 | 0.66 | 0.836421 |
Target: 5'- -cCAGCgCGcCGUGGUCGGGGUGcGCc- -3' miRNA: 3'- ucGUCG-GC-GCACUAGUCCCGCaUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 29957 | 0.66 | 0.844545 |
Target: 5'- cGCgAGCCGCG-GcgCcgcggGGGGCGU-CUGg -3' miRNA: 3'- uCG-UCGGCGCaCuaG-----UCCCGCAuGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 34003 | 0.66 | 0.844545 |
Target: 5'- gGGCGGggGCGUGggCGGGG-GUGCUc -3' miRNA: 3'- -UCGUCggCGCACuaGUCCCgCAUGAc -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 147225 | 0.66 | 0.844545 |
Target: 5'- aGGCGGCCcccGCGggGGUCGGGGCc----- -3' miRNA: 3'- -UCGUCGG---CGCa-CUAGUCCCGcaugac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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