miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 3' -57.6 NC_001806.1 + 150716 0.66 0.810972
Target:  5'- aGGCGGcCCGCccuGUgAGGGCGgGCUGg -3'
miRNA:   3'- -UCGUC-GGCGcacUAgUCCCGCaUGAC- -5'
5974 3' -57.6 NC_001806.1 + 148166 0.66 0.819627
Target:  5'- cGGCGGCgccucUGCGUGGgggggcgCGGGGCGUccgGCg- -3'
miRNA:   3'- -UCGUCG-----GCGCACUa------GUCCCGCA---UGac -5'
5974 3' -57.6 NC_001806.1 + 119031 0.66 0.828113
Target:  5'- uGGCGGCgcugcgccuUGCGUGGggcUCGGGGgCGaGCUGu -3'
miRNA:   3'- -UCGUCG---------GCGCACU---AGUCCC-GCaUGAC- -5'
5974 3' -57.6 NC_001806.1 + 41427 0.66 0.836421
Target:  5'- -cCAGCgCGcCGUGGUCGGGGUGcGCc- -3'
miRNA:   3'- ucGUCG-GC-GCACUAGUCCCGCaUGac -5'
5974 3' -57.6 NC_001806.1 + 29957 0.66 0.844545
Target:  5'- cGCgAGCCGCG-GcgCcgcggGGGGCGU-CUGg -3'
miRNA:   3'- uCG-UCGGCGCaCuaG-----UCCCGCAuGAC- -5'
5974 3' -57.6 NC_001806.1 + 34003 0.66 0.844545
Target:  5'- gGGCGGggGCGUGggCGGGG-GUGCUc -3'
miRNA:   3'- -UCGUCggCGCACuaGUCCCgCAUGAc -5'
5974 3' -57.6 NC_001806.1 + 147225 0.66 0.844545
Target:  5'- aGGCGGCCcccGCGggGGUCGGGGCc----- -3'
miRNA:   3'- -UCGUCGG---CGCa-CUAGUCCCGcaugac -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.