Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5974 | 3' | -57.6 | NC_001806.1 | + | 91179 | 0.72 | 0.505807 |
Target: 5'- cGCGGcCCGCGccaacgccGUCGGGGCGUAcCUGg -3' miRNA: 3'- uCGUC-GGCGCac------UAGUCCCGCAU-GAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 42233 | 0.73 | 0.44033 |
Target: 5'- cGGCcGCCGCGgcccCGcGGGCGUACUGg -3' miRNA: 3'- -UCGuCGGCGCacuaGU-CCCGCAUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 142193 | 0.73 | 0.449395 |
Target: 5'- gGGCGGCgGCGUGGUgaGGGGCuucgGCUGc -3' miRNA: 3'- -UCGUCGgCGCACUAg-UCCCGca--UGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 53880 | 0.75 | 0.340343 |
Target: 5'- uGGCAGCCGCGcgggGAUCAGGGuCGccgggGCg- -3' miRNA: 3'- -UCGUCGGCGCa---CUAGUCCC-GCa----UGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 5433 | 0.77 | 0.269106 |
Target: 5'- cGGCAGCCGCGcuccguguggacGAUCGGGGCGUcCUc -3' miRNA: 3'- -UCGUCGGCGCa-----------CUAGUCCCGCAuGAc -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 92902 | 0.81 | 0.157354 |
Target: 5'- uGCGGCCGCGUGGUCcgcgcagggcGGGGCGggcCUGg -3' miRNA: 3'- uCGUCGGCGCACUAG----------UCCCGCau-GAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 4014 | 1.07 | 0.002451 |
Target: 5'- cAGCAGCCGCGUGAUCAGGGCGUACUGc -3' miRNA: 3'- -UCGUCGGCGCACUAGUCCCGCAUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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