Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5974 | 3' | -57.6 | NC_001806.1 | + | 3099 | 0.66 | 0.810972 |
Target: 5'- cGGCGGCCGCG-GAgcucggCAGGcGCGg---- -3' miRNA: 3'- -UCGUCGGCGCaCUa-----GUCC-CGCaugac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 150716 | 0.66 | 0.810972 |
Target: 5'- aGGCGGcCCGCccuGUgAGGGCGgGCUGg -3' miRNA: 3'- -UCGUC-GGCGcacUAgUCCCGCaUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 4833 | 0.67 | 0.802155 |
Target: 5'- cGGCgaGGCCGCGgGGUC-GGGCGU-Cg- -3' miRNA: 3'- -UCG--UCGGCGCaCUAGuCCCGCAuGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 42563 | 0.67 | 0.784072 |
Target: 5'- uGGUaaGGCCGCGUuGUCccAGGGaCGUGCg- -3' miRNA: 3'- -UCG--UCGGCGCAcUAG--UCCC-GCAUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 103157 | 0.67 | 0.765445 |
Target: 5'- cGGCAGCCGCuGUGcgCuGGGCcuGUAg-- -3' miRNA: 3'- -UCGUCGGCG-CACuaGuCCCG--CAUgac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 45328 | 0.67 | 0.765445 |
Target: 5'- gGGCGGgCGCGauggGAUCGgGGGCGcGCg- -3' miRNA: 3'- -UCGUCgGCGCa---CUAGU-CCCGCaUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 4014 | 1.07 | 0.002451 |
Target: 5'- cAGCAGCCGCGUGAUCAGGGCGUACUGc -3' miRNA: 3'- -UCGUCGGCGCACUAGUCCCGCAUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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