Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5974 | 3' | -57.6 | NC_001806.1 | + | 4014 | 1.07 | 0.002451 |
Target: 5'- cAGCAGCCGCGUGAUCAGGGCGUACUGc -3' miRNA: 3'- -UCGUCGGCGCACUAGUCCCGCAUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 92902 | 0.81 | 0.157354 |
Target: 5'- uGCGGCCGCGUGGUCcgcgcagggcGGGGCGggcCUGg -3' miRNA: 3'- uCGUCGGCGCACUAG----------UCCCGCau-GAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 5433 | 0.77 | 0.269106 |
Target: 5'- cGGCAGCCGCGcuccguguggacGAUCGGGGCGUcCUc -3' miRNA: 3'- -UCGUCGGCGCa-----------CUAGUCCCGCAuGAc -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 53880 | 0.75 | 0.340343 |
Target: 5'- uGGCAGCCGCGcgggGAUCAGGGuCGccgggGCg- -3' miRNA: 3'- -UCGUCGGCGCa---CUAGUCCC-GCa----UGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 142193 | 0.73 | 0.449395 |
Target: 5'- gGGCGGCgGCGUGGUgaGGGGCuucgGCUGc -3' miRNA: 3'- -UCGUCGgCGCACUAg-UCCCGca--UGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 42233 | 0.73 | 0.44033 |
Target: 5'- cGGCcGCCGCGgcccCGcGGGCGUACUGg -3' miRNA: 3'- -UCGuCGGCGCacuaGU-CCCGCAUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 91179 | 0.72 | 0.505807 |
Target: 5'- cGCGGcCCGCGccaacgccGUCGGGGCGUAcCUGg -3' miRNA: 3'- uCGUC-GGCGCac------UAGUCCCGCAU-GAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 22184 | 0.69 | 0.656529 |
Target: 5'- cGGCGGCCGUGUGGgcgcccgagCuGGGCG-ACg- -3' miRNA: 3'- -UCGUCGGCGCACUa--------GuCCCGCaUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 95479 | 0.69 | 0.676848 |
Target: 5'- aAGCGGCCGCG-GAcgugCGGGaGCGacggcgGCUGu -3' miRNA: 3'- -UCGUCGGCGCaCUa---GUCC-CGCa-----UGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 144537 | 0.68 | 0.70703 |
Target: 5'- cGCGGCCGUGccGAUCGcGGGUGgUGCg- -3' miRNA: 3'- uCGUCGGCGCa-CUAGU-CCCGC-AUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 66237 | 0.68 | 0.69702 |
Target: 5'- gAGC-GuuGUGUGggCGGGGCGUuuGCUa -3' miRNA: 3'- -UCGuCggCGCACuaGUCCCGCA--UGAc -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 84878 | 0.68 | 0.69702 |
Target: 5'- uGCGGCCgGCGgGAcUCuGGGCGUGgUGc -3' miRNA: 3'- uCGUCGG-CGCaCU-AGuCCCGCAUgAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 22665 | 0.68 | 0.736645 |
Target: 5'- cGGC-GCCGCGggGAUCcucgccgcccuGGGGCG-GCUGu -3' miRNA: 3'- -UCGuCGGCGCa-CUAG-----------UCCCGCaUGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 3003 | 0.68 | 0.735669 |
Target: 5'- cGGCGGCCGCcagcgcGUCGGcGGCGUccggugcGCUGg -3' miRNA: 3'- -UCGUCGGCGcac---UAGUC-CCGCA-------UGAC- -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 147768 | 0.68 | 0.69702 |
Target: 5'- cGCGGCCGCGgacgcgggGGgccCGGGGCGggggGCg- -3' miRNA: 3'- uCGUCGGCGCa-------CUa--GUCCCGCa---UGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 103157 | 0.67 | 0.765445 |
Target: 5'- cGGCAGCCGCuGUGcgCuGGGCcuGUAg-- -3' miRNA: 3'- -UCGUCGGCG-CACuaGuCCCG--CAUgac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 45328 | 0.67 | 0.765445 |
Target: 5'- gGGCGGgCGCGauggGAUCGgGGGCGcGCg- -3' miRNA: 3'- -UCGUCgGCGCa---CUAGU-CCCGCaUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 42563 | 0.67 | 0.784072 |
Target: 5'- uGGUaaGGCCGCGUuGUCccAGGGaCGUGCg- -3' miRNA: 3'- -UCG--UCGGCGCAcUAG--UCCC-GCAUGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 4833 | 0.67 | 0.802155 |
Target: 5'- cGGCgaGGCCGCGgGGUC-GGGCGU-Cg- -3' miRNA: 3'- -UCG--UCGGCGCaCUAGuCCCGCAuGac -5' |
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5974 | 3' | -57.6 | NC_001806.1 | + | 148166 | 0.66 | 0.819627 |
Target: 5'- cGGCGGCgccucUGCGUGGgggggcgCGGGGCGUccgGCg- -3' miRNA: 3'- -UCGUCG-----GCGCACUa------GUCCCGCA---UGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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