miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 140015 0.66 0.561771
Target:  5'- gUCAGCUccucgcgCGGcgaaaGCGCCCGgagcgcCACGGCCGg -3'
miRNA:   3'- gGGUCGA-------GCC-----CGCGGGU------GUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 24353 0.66 0.561771
Target:  5'- uUCGGCcCGGGgGUCUucGCGCgcguggaGGCCGCg -3'
miRNA:   3'- gGGUCGaGCCCgCGGG--UGUG-------CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 126906 0.66 0.558938
Target:  5'- aCCCAGCaa-GGCGUCCAUucucccgaaccaGGCCGUu -3'
miRNA:   3'- -GGGUCGagcCCGCGGGUGug----------CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 7031 0.66 0.557051
Target:  5'- cCCCAGUUgggcCGGGCGaCCCagauguuuacuuaaaAgGCGuGCCGUc -3'
miRNA:   3'- -GGGUCGA----GCCCGC-GGG---------------UgUGC-CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 94944 0.66 0.553284
Target:  5'- uUCUGGCUCGcguccGGCGaCCGCGCcGGCCa- -3'
miRNA:   3'- -GGGUCGAGC-----CCGCgGGUGUG-CCGGcg -5'
5974 5' -64.1 NC_001806.1 + 51017 0.66 0.553284
Target:  5'- cCCCguaAGCggCGGGUccguguuggGCCCGCG-GGuCCGCg -3'
miRNA:   3'- -GGG---UCGa-GCCCG---------CGGGUGUgCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 73928 0.66 0.553284
Target:  5'- gCCCucGCUCGcGGgGUCgACGCGGUCu- -3'
miRNA:   3'- -GGGu-CGAGC-CCgCGGgUGUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 84081 0.66 0.553284
Target:  5'- cCCCAGCUgcgcgcugccgCGGaG-GCCCGucgcgcCACGGuCCGCc -3'
miRNA:   3'- -GGGUCGA-----------GCC-CgCGGGU------GUGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 130188 0.66 0.553284
Target:  5'- gCCGGUUCaagGGGCGCUgugaCGCGuCGGCaUGCg -3'
miRNA:   3'- gGGUCGAG---CCCGCGG----GUGU-GCCG-GCG- -5'
5974 5' -64.1 NC_001806.1 + 66614 0.66 0.553284
Target:  5'- aUCCGGa---GGCGCCCAaACaGCCGCu -3'
miRNA:   3'- -GGGUCgagcCCGCGGGUgUGcCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 101916 0.66 0.553284
Target:  5'- gCCCcGCcUGGGCGUCaagaCACAgGGCgGCc -3'
miRNA:   3'- -GGGuCGaGCCCGCGG----GUGUgCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 103799 0.66 0.553284
Target:  5'- cCCCGGg-C-GGCGCCgC-CGCGGCgGCg -3'
miRNA:   3'- -GGGUCgaGcCCGCGG-GuGUGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 136683 0.66 0.553284
Target:  5'- aCCAGCcguUgGGGCuGCagaCCGCG-GGCCGCc -3'
miRNA:   3'- gGGUCG---AgCCCG-CG---GGUGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 151534 0.66 0.553284
Target:  5'- -aCGGCgccCGuGG-GCCCGgGCGGCCGg -3'
miRNA:   3'- ggGUCGa--GC-CCgCGGGUgUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 113553 0.66 0.550463
Target:  5'- gCCCGGCUCGuGGUccagugcaucaccaGCUacuggaacaaCACGCGGUgCGCg -3'
miRNA:   3'- -GGGUCGAGC-CCG--------------CGG----------GUGUGCCG-GCG- -5'
5974 5' -64.1 NC_001806.1 + 22849 0.66 0.543899
Target:  5'- gCCgagGGCuUCGacGGCGaCCugGCGGCCGUc -3'
miRNA:   3'- gGG---UCG-AGC--CCGCgGGugUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 67865 0.66 0.543899
Target:  5'- aCCCAcGCcgucCGGGCuGCCCGCACauCCGg -3'
miRNA:   3'- -GGGU-CGa---GCCCG-CGGGUGUGccGGCg -5'
5974 5' -64.1 NC_001806.1 + 3446 0.66 0.543899
Target:  5'- gCCAGgcaCUCGa-CGgCCACGCGGCCGg -3'
miRNA:   3'- gGGUC---GAGCccGCgGGUGUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 73111 0.66 0.543899
Target:  5'- aCCCGGC-CGGGCcgccggucGCCgAgGCGGgCGa -3'
miRNA:   3'- -GGGUCGaGCCCG--------CGGgUgUGCCgGCg -5'
5974 5' -64.1 NC_001806.1 + 128067 0.66 0.543899
Target:  5'- cCCCAGg-UGGGgGCCCaccaACACGcGCaCGUa -3'
miRNA:   3'- -GGGUCgaGCCCgCGGG----UGUGC-CG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.