miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 106532 0.66 0.572191
Target:  5'- gCUgguGCUCGGGUGCgaugCCGCGCuGGUgCGCg -3'
miRNA:   3'- gGGu--CGAGCCCGCG----GGUGUG-CCG-GCG- -5'
5974 5' -64.1 NC_001806.1 + 2667 0.66 0.572191
Target:  5'- -gCGGCcgCGGGCGCCgCcgugugGCugGGCCcCg -3'
miRNA:   3'- ggGUCGa-GCCCGCGG-G------UGugCCGGcG- -5'
5974 5' -64.1 NC_001806.1 + 75499 0.66 0.572191
Target:  5'- aCCGGCgcgCGGGaaaGCCuCGCG-GGCCa- -3'
miRNA:   3'- gGGUCGa--GCCCg--CGG-GUGUgCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 79467 0.66 0.572191
Target:  5'- uCCCAGUgugcacCGcGGC-CCC-CugGGCCGg -3'
miRNA:   3'- -GGGUCGa-----GC-CCGcGGGuGugCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 92339 0.66 0.572191
Target:  5'- cCCCAGCcuaaCGGcCGgCCAgACGGCCc- -3'
miRNA:   3'- -GGGUCGa---GCCcGCgGGUgUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 93978 0.66 0.572191
Target:  5'- cUCCGGCcgCGguacagaucGGCGCCgCGagAUGGCCGCc -3'
miRNA:   3'- -GGGUCGa-GC---------CCGCGG-GUg-UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 106898 0.66 0.572191
Target:  5'- cCCCcuCUCuucuGGCGCCUaACGgGGCUGCu -3'
miRNA:   3'- -GGGucGAGc---CCGCGGG-UGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 4938 0.66 0.571242
Target:  5'- gCCGGCgUC-GGUGCCCGcCGCGGgggcccucccgucCCGCc -3'
miRNA:   3'- gGGUCG-AGcCCGCGGGU-GUGCC-------------GGCG- -5'
5974 5' -64.1 NC_001806.1 + 52030 0.66 0.571242
Target:  5'- uCCC-GCUCGGcggcagcccggagGCGCCCGCggaaACGuuCGCg -3'
miRNA:   3'- -GGGuCGAGCC-------------CGCGGGUG----UGCcgGCG- -5'
5974 5' -64.1 NC_001806.1 + 112357 0.66 0.562716
Target:  5'- gCCUGGCUCGuGGaC-CUCAcCACGGCCacGCa -3'
miRNA:   3'- -GGGUCGAGC-CC-GcGGGU-GUGCCGG--CG- -5'
5974 5' -64.1 NC_001806.1 + 4848 0.66 0.562716
Target:  5'- gUCgGGCgUCGGGauCGUCCGgACGGCCu- -3'
miRNA:   3'- -GGgUCG-AGCCC--GCGGGUgUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 23937 0.66 0.562716
Target:  5'- gCCGGCggCGGG-GCCUgggGgGGCCGCc -3'
miRNA:   3'- gGGUCGa-GCCCgCGGGug-UgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 54624 0.66 0.562716
Target:  5'- gCCAGCcCgGGGUGgUCGCACgacuccugGGCCGUa -3'
miRNA:   3'- gGGUCGaG-CCCGCgGGUGUG--------CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 85519 0.66 0.562716
Target:  5'- aCCGGUUCGu-CGCCCACGugUGGCagaGCa -3'
miRNA:   3'- gGGUCGAGCccGCGGGUGU--GCCGg--CG- -5'
5974 5' -64.1 NC_001806.1 + 111920 0.66 0.562716
Target:  5'- aCCAGC-CGcugauUGCCCGCgACGGcCCGCa -3'
miRNA:   3'- gGGUCGaGCcc---GCGGGUG-UGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 128545 0.66 0.562716
Target:  5'- gCCAGacggCGGcccGCGUCCaggGCGCGGUCGUa -3'
miRNA:   3'- gGGUCga--GCC---CGCGGG---UGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 150600 0.66 0.562716
Target:  5'- gCCCGGCccaUUGGGCgguaacucccGCCCAaugGGCCGg -3'
miRNA:   3'- -GGGUCG---AGCCCG----------CGGGUgugCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 10008 0.66 0.562716
Target:  5'- cCCCGGgaCGGGC-UCCAUgugagccuCGGCCGa -3'
miRNA:   3'- -GGGUCgaGCCCGcGGGUGu-------GCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 31255 0.66 0.562716
Target:  5'- cCCUAGU--GGGCGCCCugGacuuCCGCa -3'
miRNA:   3'- -GGGUCGagCCCGCGGGugUgcc-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 90884 0.66 0.562716
Target:  5'- aCguGgaCGccGUgGCCCGCGCGGCCGCc -3'
miRNA:   3'- gGguCgaGCc-CG-CGGGUGUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.