miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 132181 0.74 0.200588
Target:  5'- gCUGGCgUGGGCGCgCCugGCGGCCa- -3'
miRNA:   3'- gGGUCGaGCCCGCG-GGugUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 4116 0.74 0.205313
Target:  5'- cUCCGcCUCGGGCGCCCcccagaggcccGgGCGGCUGUc -3'
miRNA:   3'- -GGGUcGAGCCCGCGGG-----------UgUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 145004 0.74 0.205313
Target:  5'- cCCCGGCcCgGGGC-CCCACaACGGCCcgGCg -3'
miRNA:   3'- -GGGUCGaG-CCCGcGGGUG-UGCCGG--CG- -5'
5974 5' -64.1 NC_001806.1 + 5588 0.74 0.205313
Target:  5'- gCCGGCacgcCGGGgGCCCG--UGGCCGCg -3'
miRNA:   3'- gGGUCGa---GCCCgCGGGUguGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 77379 0.74 0.205313
Target:  5'- gCCAGa-CGGGCGCgggCGCgGCGGCCGCg -3'
miRNA:   3'- gGGUCgaGCCCGCGg--GUG-UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 69412 0.73 0.215054
Target:  5'- uUCUGGCggCGGGCGucCCCGCGCGGaCGCc -3'
miRNA:   3'- -GGGUCGa-GCCCGC--GGGUGUGCCgGCG- -5'
5974 5' -64.1 NC_001806.1 + 30174 0.73 0.220071
Target:  5'- cCCCcGCccCGGGCccCCCGCguccGCGGCCGCg -3'
miRNA:   3'- -GGGuCGa-GCCCGc-GGGUG----UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 31095 0.73 0.220071
Target:  5'- aCCCGGCUgCGGGCcgcgGUCCccgGCugGaGCCGCc -3'
miRNA:   3'- -GGGUCGA-GCCCG----CGGG---UGugC-CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 22432 0.73 0.220071
Target:  5'- uUCGGCUgGGGCcugGCgCACGCGGCgGCc -3'
miRNA:   3'- gGGUCGAgCCCG---CGgGUGUGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 147751 0.73 0.225188
Target:  5'- --gGGCgcgCGGGUcCCgACGCGGCCGCg -3'
miRNA:   3'- gggUCGa--GCCCGcGGgUGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 111185 0.73 0.225188
Target:  5'- cCCCuGCgcacaCGGGCccuggggauaGCCUGCGCGGCCGg -3'
miRNA:   3'- -GGGuCGa----GCCCG----------CGGGUGUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 24018 0.73 0.225188
Target:  5'- aCCGGCUgugCGGGC-CggACACGGCCGCc -3'
miRNA:   3'- gGGUCGA---GCCCGcGggUGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 79863 0.73 0.225188
Target:  5'- uCCC-GCUCGGGC-CCCA---GGCCGCc -3'
miRNA:   3'- -GGGuCGAGCCCGcGGGUgugCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 116969 0.73 0.225188
Target:  5'- uCCCguGGUUCGGGUGUgCACcuuugacggcGCGGCCGUu -3'
miRNA:   3'- -GGG--UCGAGCCCGCGgGUG----------UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 5935 0.73 0.22988
Target:  5'- gCCGGCgggCGGGacCGCCCcaaggggGCGgGGCCGCc -3'
miRNA:   3'- gGGUCGa--GCCC--GCGGG-------UGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 21500 0.73 0.230406
Target:  5'- gCCGGCgacCGGGC-CCCGgccCGgGGCCGCg -3'
miRNA:   3'- gGGUCGa--GCCCGcGGGU---GUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 26473 0.73 0.232521
Target:  5'- gCCCAaCUCGGaacccgcggucaggaGCGCgCC-CGCGGCCGCc -3'
miRNA:   3'- -GGGUcGAGCC---------------CGCG-GGuGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 109304 0.73 0.235725
Target:  5'- gCCGGCgaaacgccagCGGG-GCCCACGCGGUCa- -3'
miRNA:   3'- gGGUCGa---------GCCCgCGGGUGUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 77938 0.73 0.243344
Target:  5'- gCCCAGCUggaaugggggggugaCGcGGCgGCCC-CGgGGCCGCc -3'
miRNA:   3'- -GGGUCGA---------------GC-CCG-CGGGuGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 33743 0.73 0.246672
Target:  5'- gCCGGCUCuGcGGUGUCgGCgGCGGCUGCg -3'
miRNA:   3'- gGGUCGAG-C-CCGCGGgUG-UGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.