miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 4053 1.11 0.000469
Target:  5'- gCCCAGCUCGGGCGCCCACACGGCCGCc -3'
miRNA:   3'- -GGGUCGAGCCCGCGGGUGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 22160 0.8 0.073799
Target:  5'- gCCGGUucgaggccUCGGGCGCCCcgGCGGCCGUg -3'
miRNA:   3'- gGGUCG--------AGCCCGCGGGugUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 50877 0.79 0.085778
Target:  5'- cCCCgccaAGUUCuGGGCGgacUCCGCGCGGCCGCg -3'
miRNA:   3'- -GGG----UCGAG-CCCGC---GGGUGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 107027 0.79 0.090167
Target:  5'- gCCGGgUUGGcCGCCCGCGgGGCCGCg -3'
miRNA:   3'- gGGUCgAGCCcGCGGGUGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 23451 0.79 0.09477
Target:  5'- gCCCAGCcCGcGGCGCCC-CG-GGCCGCc -3'
miRNA:   3'- -GGGUCGaGC-CCGCGGGuGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 23375 0.78 0.104649
Target:  5'- cCCCGGCUCGGaCGCCCGCGCcccccuccCCGCg -3'
miRNA:   3'- -GGGUCGAGCCcGCGGGUGUGcc------GGCG- -5'
5974 5' -64.1 NC_001806.1 + 95962 0.78 0.109945
Target:  5'- --gGGCUCGGGUGCUgAUugGGCCGUc -3'
miRNA:   3'- gggUCGAGCCCGCGGgUGugCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 21136 0.78 0.112686
Target:  5'- cCCCGGCUCcccGGGC-CCCACcgACGGgCCGCc -3'
miRNA:   3'- -GGGUCGAG---CCCGcGGGUG--UGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 114343 0.76 0.143816
Target:  5'- gCUCuGCUCGgcGGCGCCCgACGCGGgCGCc -3'
miRNA:   3'- -GGGuCGAGC--CCGCGGG-UGUGCCgGCG- -5'
5974 5' -64.1 NC_001806.1 + 23570 0.76 0.143816
Target:  5'- gCCCAGCcacaCGgcGGCGCCC--GCGGCCGCc -3'
miRNA:   3'- -GGGUCGa---GC--CCGCGGGugUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 115107 0.76 0.150921
Target:  5'- cCCCGuGUUCGGguGCGCCCAggugcCGCGGCgCGCa -3'
miRNA:   3'- -GGGU-CGAGCC--CGCGGGU-----GUGCCG-GCG- -5'
5974 5' -64.1 NC_001806.1 + 46103 0.76 0.150921
Target:  5'- gUCCGGCcCGGG-GCCUGCGCGGgCGCc -3'
miRNA:   3'- -GGGUCGaGCCCgCGGGUGUGCCgGCG- -5'
5974 5' -64.1 NC_001806.1 + 7794 0.76 0.154221
Target:  5'- cCCCGGCUacaggggccauguUGGGcCGCCaCGCGCGGCUGg -3'
miRNA:   3'- -GGGUCGA-------------GCCC-GCGG-GUGUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 93871 0.75 0.157965
Target:  5'- uCCCGGCuugccggUCGGcGgGCCCGCGggaGGCCGCc -3'
miRNA:   3'- -GGGUCG-------AGCC-CgCGGGUGUg--CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 103119 0.75 0.182622
Target:  5'- --gAGCUCGGcCGCCUGCAUGGCgGCg -3'
miRNA:   3'- gggUCGAGCCcGCGGGUGUGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 118741 0.74 0.186975
Target:  5'- gCCUGGCggccgCGGGaauccccuggcCGCCCugauGCGCGGCCGCc -3'
miRNA:   3'- -GGGUCGa----GCCC-----------GCGGG----UGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 2174 0.74 0.190077
Target:  5'- gCCCAGCgccgacacgUCGGGggcgccgguccaauUGCCCGCccagGCGGCCGUg -3'
miRNA:   3'- -GGGUCG---------AGCCC--------------GCGGGUG----UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 137743 0.74 0.19142
Target:  5'- gCCgGGCUCcuuGGGCGUCaccuccuCACGGCCGUg -3'
miRNA:   3'- -GGgUCGAG---CCCGCGGgu-----GUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 82851 0.74 0.195957
Target:  5'- cUCCAGCUCggcGGGgGUcauauccucgaaCCAgACGGCCGCg -3'
miRNA:   3'- -GGGUCGAG---CCCgCG------------GGUgUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 151440 0.74 0.195957
Target:  5'- aCCGGCgggGGGCGgCgGCgggGCGGCCGCg -3'
miRNA:   3'- gGGUCGag-CCCGCgGgUG---UGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.