miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 1426 0.68 0.462314
Target:  5'- gCCCAGCgaauccCGGGCGgC-GC-CGGCgGCa -3'
miRNA:   3'- -GGGUCGa-----GCCCGCgGgUGuGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 1515 0.7 0.327557
Target:  5'- cUCCAGCagggcgCGGGCGCaaaagucCCucCGCGGcCCGCg -3'
miRNA:   3'- -GGGUCGa-----GCCCGCG-------GGu-GUGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 1564 0.67 0.496951
Target:  5'- gCCgGGC-CGGcgcgcaccgccucGCGCCCcagcgccacguACACGGgCCGCa -3'
miRNA:   3'- -GGgUCGaGCC-------------CGCGGG-----------UGUGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 1677 0.7 0.375202
Target:  5'- gUCCGGCgcgcCGGGCGCCaugGCGucggugguccccgaGGCCGCc -3'
miRNA:   3'- -GGGUCGa---GCCCGCGGg--UGUg-------------CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 1723 0.69 0.395529
Target:  5'- gCCCGGC-CGuccaGCGCCggcaGCACGGCCcgGCg -3'
miRNA:   3'- -GGGUCGaGCc---CGCGGg---UGUGCCGG--CG- -5'
5974 5' -64.1 NC_001806.1 + 1780 0.67 0.506932
Target:  5'- aCCGGCgugucCGGGCcgaagcgcguGCgCACGCGGUagCGCa -3'
miRNA:   3'- gGGUCGa----GCCCG----------CGgGUGUGCCG--GCG- -5'
5974 5' -64.1 NC_001806.1 + 1961 0.68 0.453637
Target:  5'- gCCAGCgcacGGCGCaCUGCACGGCgGg -3'
miRNA:   3'- gGGUCGagc-CCGCG-GGUGUGCCGgCg -5'
5974 5' -64.1 NC_001806.1 + 2174 0.74 0.190077
Target:  5'- gCCCAGCgccgacacgUCGGGggcgccgguccaauUGCCCGCccagGCGGCCGUg -3'
miRNA:   3'- -GGGUCG---------AGCCC--------------GCGGGUG----UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 2667 0.66 0.572191
Target:  5'- -gCGGCcgCGGGCGCCgCcgugugGCugGGCCcCg -3'
miRNA:   3'- ggGUCGa-GCCCGCGG-G------UGugCCGGcG- -5'
5974 5' -64.1 NC_001806.1 + 2820 0.67 0.519757
Target:  5'- gCgGGCUCGGGC-CCCgggggcguggaggggGgCGCGGgCGCg -3'
miRNA:   3'- gGgUCGAGCCCGcGGG---------------U-GUGCCgGCG- -5'
5974 5' -64.1 NC_001806.1 + 3011 0.71 0.294701
Target:  5'- gCCAGCgcgUCGGcgGCGUCCgguGCGCuGGCCGCc -3'
miRNA:   3'- gGGUCG---AGCC--CGCGGG---UGUG-CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 3161 0.68 0.453637
Target:  5'- aCCAgGCUCacGGCGCgCACGgCGGCCa- -3'
miRNA:   3'- gGGU-CGAGc-CCGCGgGUGU-GCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 3312 0.7 0.328255
Target:  5'- -gCGGCggggaagCGGG-GCCCGCGggucccucCGGCCGCg -3'
miRNA:   3'- ggGUCGa------GCCCgCGGGUGU--------GCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 3359 0.68 0.44505
Target:  5'- gCgGGC-CGGGCcccggccaGCCCcgGgACGGCCGCc -3'
miRNA:   3'- gGgUCGaGCCCG--------CGGG--UgUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 3446 0.66 0.543899
Target:  5'- gCCAGgcaCUCGa-CGgCCACGCGGCCGg -3'
miRNA:   3'- gGGUC---GAGCccGCgGGUGUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 3603 0.69 0.403534
Target:  5'- aCCCGGCgggcacCGcGCGCUCGCccgguGCGGCgGCg -3'
miRNA:   3'- -GGGUCGa-----GCcCGCGGGUG-----UGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 3670 0.67 0.506932
Target:  5'- gCCGGCgccgGGGCuCCC-CGCGGCCc- -3'
miRNA:   3'- gGGUCGag--CCCGcGGGuGUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 3856 0.72 0.269827
Target:  5'- gCCCAGgUgGGGCacgGCCCGCGCcacGCUGCc -3'
miRNA:   3'- -GGGUCgAgCCCG---CGGGUGUGc--CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 4053 1.11 0.000469
Target:  5'- gCCCAGCUCGGGCGCCCACACGGCCGCc -3'
miRNA:   3'- -GGGUCGAGCCCGCGGGUGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 4116 0.74 0.205313
Target:  5'- cUCCGcCUCGGGCGCCCcccagaggcccGgGCGGCUGUc -3'
miRNA:   3'- -GGGUcGAGCCCGCGGG-----------UgUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.