miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 151700 0.69 0.417375
Target:  5'- --gGGCcCGGGCuGCCCGCcgccaccgcuuuaaAgGGCCGCg -3'
miRNA:   3'- gggUCGaGCCCG-CGGGUG--------------UgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 151534 0.66 0.553284
Target:  5'- -aCGGCgccCGuGG-GCCCGgGCGGCCGg -3'
miRNA:   3'- ggGUCGa--GC-CCgCGGGUgUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 151440 0.74 0.195957
Target:  5'- aCCGGCgggGGGCGgCgGCgggGCGGCCGCg -3'
miRNA:   3'- gGGUCGag-CCCGCgGgUG---UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 151327 0.69 0.387627
Target:  5'- gCCGGCUCGGGCgggggGCUguC-CGGCCa- -3'
miRNA:   3'- gGGUCGAGCCCG-----CGGguGuGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 151042 0.67 0.506932
Target:  5'- aCCCGGacgUgGGGCGagaagcgcaCCCGCGCgggGGUCGCg -3'
miRNA:   3'- -GGGUCg--AgCCCGC---------GGGUGUG---CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 150973 0.72 0.263879
Target:  5'- gCCC-GCUCGcGG-GCCCACGa-GCCGCg -3'
miRNA:   3'- -GGGuCGAGC-CCgCGGGUGUgcCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 150889 0.72 0.282046
Target:  5'- gCCCGGgcacgggcCUCGGGC-CCCagGCACGGCC-Cg -3'
miRNA:   3'- -GGGUC--------GAGCCCGcGGG--UGUGCCGGcG- -5'
5974 5' -64.1 NC_001806.1 + 150664 0.7 0.327557
Target:  5'- gUUGGC-CGGGC-CCCGCcgcgcugGCGGCCGCc -3'
miRNA:   3'- gGGUCGaGCCCGcGGGUG-------UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 150600 0.66 0.562716
Target:  5'- gCCCGGCccaUUGGGCgguaacucccGCCCAaugGGCCGg -3'
miRNA:   3'- -GGGUCG---AGCCCG----------CGGGUgugCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 149657 0.7 0.349707
Target:  5'- gCCCGGCUCccguguaugaguGGGgGUCCcccaACAUGGCgGCc -3'
miRNA:   3'- -GGGUCGAG------------CCCgCGGG----UGUGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 149248 0.66 0.591248
Target:  5'- aCCGGagUCGGGgGUCC-CACGGCg-- -3'
miRNA:   3'- gGGUCg-AGCCCgCGGGuGUGCCGgcg -5'
5974 5' -64.1 NC_001806.1 + 148120 0.71 0.317219
Target:  5'- gCCGGCUgGGGggcugcgugagaCGCCCcgcccgucacgggggGCGCGGCgGCg -3'
miRNA:   3'- gGGUCGAgCCC------------GCGGG---------------UGUGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 147807 0.69 0.419848
Target:  5'- gCCUGGCaUGGGCGCCgCGgGgGGCCuGUg -3'
miRNA:   3'- -GGGUCGaGCCCGCGG-GUgUgCCGG-CG- -5'
5974 5' -64.1 NC_001806.1 + 147751 0.73 0.225188
Target:  5'- --gGGCgcgCGGGUcCCgACGCGGCCGCg -3'
miRNA:   3'- gggUCGa--GCCCGcGGgUGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 147708 0.72 0.282046
Target:  5'- cCCCGGaggcGGCGCUCGCacgcacggggccACGGCCGCg -3'
miRNA:   3'- -GGGUCgagcCCGCGGGUG------------UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 146849 0.67 0.497855
Target:  5'- cUCCAGC-CGGGgaccgcgGCCCGCAgccgGGUCGCc -3'
miRNA:   3'- -GGGUCGaGCCCg------CGGGUGUg---CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 146665 0.68 0.436554
Target:  5'- cCCCGGaccaCGGGUGCcgagaCCGCA-GGCUGCg -3'
miRNA:   3'- -GGGUCga--GCCCGCG-----GGUGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 145004 0.74 0.205313
Target:  5'- cCCCGGCcCgGGGC-CCCACaACGGCCcgGCg -3'
miRNA:   3'- -GGGUCGaG-CCCGcGGGUG-UGCCGG--CG- -5'
5974 5' -64.1 NC_001806.1 + 144811 0.67 0.497855
Target:  5'- gCCCGGgaCGaGGgGCCCccgacCGCGGCgGUc -3'
miRNA:   3'- -GGGUCgaGC-CCgCGGGu----GUGCCGgCG- -5'
5974 5' -64.1 NC_001806.1 + 141845 0.7 0.335297
Target:  5'- gCCAGCUCaGGC-UCCAUcaGgGGCCGCc -3'
miRNA:   3'- gGGUCGAGcCCGcGGGUG--UgCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.