miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 4179 0.68 0.453637
Target:  5'- cCCCGGgggCGGGgGCCCGgcgccgggcCACGGCucccCGCu -3'
miRNA:   3'- -GGGUCga-GCCCgCGGGU---------GUGCCG----GCG- -5'
5974 5' -64.1 NC_001806.1 + 4272 0.68 0.428153
Target:  5'- gUCCAGCUCgacccgccgGGGCuGCCCGgccgugaaGCGGcCCGUg -3'
miRNA:   3'- -GGGUCGAG---------CCCG-CGGGUg-------UGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 4345 0.7 0.349707
Target:  5'- gCCCGGCggCGcucgauGCgGCCCGCGgaGGCCGCg -3'
miRNA:   3'- -GGGUCGa-GCc-----CG-CGGGUGUg-CCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 4742 0.67 0.497855
Target:  5'- cCCgGGC-CGGG-GCCCggucgccggcgGCGuCGGCUGCg -3'
miRNA:   3'- -GGgUCGaGCCCgCGGG-----------UGU-GCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 4848 0.66 0.562716
Target:  5'- gUCgGGCgUCGGGauCGUCCGgACGGCCu- -3'
miRNA:   3'- -GGgUCG-AGCCC--GCGGGUgUGCCGGcg -5'
5974 5' -64.1 NC_001806.1 + 4938 0.66 0.571242
Target:  5'- gCCGGCgUC-GGUGCCCGcCGCGGgggcccucccgucCCGCc -3'
miRNA:   3'- gGGUCG-AGcCCGCGGGU-GUGCC-------------GGCG- -5'
5974 5' -64.1 NC_001806.1 + 5588 0.74 0.205313
Target:  5'- gCCGGCacgcCGGGgGCCCG--UGGCCGCg -3'
miRNA:   3'- gGGUCGa---GCCCgCGGGUguGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 5885 0.66 0.581704
Target:  5'- aCgGGacggCGGGCgGCCCAag-GGCCGCc -3'
miRNA:   3'- gGgUCga--GCCCG-CGGGUgugCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 5935 0.73 0.22988
Target:  5'- gCCGGCgggCGGGacCGCCCcaaggggGCGgGGCCGCc -3'
miRNA:   3'- gGGUCGa--GCCC--GCGGG-------UGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 6070 0.66 0.591248
Target:  5'- gCCGGCccCGGGggcggGCCCGgGCGGCgGg -3'
miRNA:   3'- gGGUCGa-GCCCg----CGGGUgUGCCGgCg -5'
5974 5' -64.1 NC_001806.1 + 6128 0.67 0.522522
Target:  5'- gCCCGGCgcgacCGacgcccgcagacGGCGCCgGCcacgaacgacgggaGCGGCUGCg -3'
miRNA:   3'- -GGGUCGa----GC------------CCGCGGgUG--------------UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 6252 0.72 0.274663
Target:  5'- cCCCGGCUCGGGaucgggauCGCaucggaaagggaCACGCGGaCGCg -3'
miRNA:   3'- -GGGUCGAGCCC--------GCGg-----------GUGUGCCgGCG- -5'
5974 5' -64.1 NC_001806.1 + 7031 0.66 0.557051
Target:  5'- cCCCAGUUgggcCGGGCGaCCCagauguuuacuuaaaAgGCGuGCCGUc -3'
miRNA:   3'- -GGGUCGA----GCCCGC-GGG---------------UgUGC-CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 7794 0.76 0.154221
Target:  5'- cCCCGGCUacaggggccauguUGGGcCGCCaCGCGCGGCUGg -3'
miRNA:   3'- -GGGUCGA-------------GCCC-GCGG-GUGUGCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 10008 0.66 0.562716
Target:  5'- cCCCGGgaCGGGC-UCCAUgugagccuCGGCCGa -3'
miRNA:   3'- -GGGUCgaGCCCGcGGGUGu-------GCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 10723 0.68 0.462314
Target:  5'- gCCAGCgggacCGGaGCGCgCAUGCacGCCGCa -3'
miRNA:   3'- gGGUCGa----GCC-CGCGgGUGUGc-CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 11353 0.66 0.581704
Target:  5'- gCCCAGCcgccccagCGGGCuCCgACucuucggcgAUGGCCGUc -3'
miRNA:   3'- -GGGUCGa-------GCCCGcGGgUG---------UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 11464 0.67 0.534567
Target:  5'- gCUCGGCUcCGaGGCGggC-CAUGGCCGCu -3'
miRNA:   3'- -GGGUCGA-GC-CCGCggGuGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 19024 0.71 0.307793
Target:  5'- gCCCAGgUCGGGgGUCCAuCGUGcGCUGCu -3'
miRNA:   3'- -GGGUCgAGCCCgCGGGU-GUGC-CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 19350 0.67 0.51608
Target:  5'- cCCCaAGcCUCcgGGGgGCCC-UACGGCCa- -3'
miRNA:   3'- -GGG-UC-GAG--CCCgCGGGuGUGCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.