Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5975 | 5' | -55.2 | NC_001806.1 | + | 88137 | 0.69 | 0.804803 |
Target: 5'- -gGAGGACGugcuccaGGGcgGUGGugGACa -3' miRNA: 3'- ugCUCCUGCuuc----UCCuaCGCCugCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 127396 | 0.69 | 0.804803 |
Target: 5'- cCGGGGuuGAGGGGGGgggGgGGACGGu -3' miRNA: 3'- uGCUCCugCUUCUCCUa--CgCCUGCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 53105 | 0.69 | 0.804803 |
Target: 5'- aGCGAGGACGggGGGcGUGUcuACGAg -3' miRNA: 3'- -UGCUCCUGCuuCUCcUACGccUGCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 145626 | 0.7 | 0.786754 |
Target: 5'- aGCGAGGAUacGGAGGAgugGCGGGUGcCg -3' miRNA: 3'- -UGCUCCUGcuUCUCCUa--CGCCUGCuG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 62828 | 0.7 | 0.786754 |
Target: 5'- cCGAGaucuGCGccGAGGcgGCGGugGGCa -3' miRNA: 3'- uGCUCc---UGCuuCUCCuaCGCCugCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 25649 | 0.7 | 0.786754 |
Target: 5'- gGCuGGGGCuGggGAGGggGCGGugGu- -3' miRNA: 3'- -UGcUCCUG-CuuCUCCuaCGCCugCug -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 145559 | 0.7 | 0.786754 |
Target: 5'- uGCGGGGGa-GGGGGGGUGUGGAaggaaaugcaCGGCg -3' miRNA: 3'- -UGCUCCUgcUUCUCCUACGCCU----------GCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 149849 | 0.7 | 0.785837 |
Target: 5'- cAUGGGGgucguauGCGGcuGGAGGGUcGCGGACGGa -3' miRNA: 3'- -UGCUCC-------UGCU--UCUCCUA-CGCCUGCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 133147 | 0.7 | 0.777517 |
Target: 5'- uGCGGGGGCGAuGGGGGUGCGuuCu-- -3' miRNA: 3'- -UGCUCCUGCUuCUCCUACGCcuGcug -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 2984 | 0.7 | 0.768149 |
Target: 5'- cCGcGGcGCGggGAGGcgGCGG-CGGCc -3' miRNA: 3'- uGCuCC-UGCuuCUCCuaCGCCuGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 120326 | 0.7 | 0.767206 |
Target: 5'- gACG-GGGCGGucGGGGGcgGCGGgucgucccgcucgGCGACg -3' miRNA: 3'- -UGCuCCUGCU--UCUCCuaCGCC-------------UGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 79044 | 0.7 | 0.76247 |
Target: 5'- aGCGAGGccacCGAGGAGcucccguuugugGCGGGCGGCg -3' miRNA: 3'- -UGCUCCu---GCUUCUCcua---------CGCCUGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 9208 | 0.7 | 0.758661 |
Target: 5'- gGCGAGGGCgcggucgacguGgcGAGGG-GCGGGCGGu -3' miRNA: 3'- -UGCUCCUG-----------CuuCUCCUaCGCCUGCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 25412 | 0.7 | 0.758661 |
Target: 5'- -aGGGGGCGAGG-GGcgGUGGugGuGCg -3' miRNA: 3'- ugCUCCUGCUUCuCCuaCGCCugC-UG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 71530 | 0.7 | 0.74906 |
Target: 5'- uGCGGgcGGGCGggGGGGGggGUGGAaGACc -3' miRNA: 3'- -UGCU--CCUGCuuCUCCUa-CGCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 149909 | 0.71 | 0.738381 |
Target: 5'- gGCGGGGcuucuguggugauGCGGAGAGGggGCGGccCGAg -3' miRNA: 3'- -UGCUCC-------------UGCUUCUCCuaCGCCu-GCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 151557 | 0.71 | 0.72956 |
Target: 5'- cCGGGGGCGgcGGGGGccgcgaugGCGGcgGCGGCg -3' miRNA: 3'- uGCUCCUGCuuCUCCUa-------CGCC--UGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 6077 | 0.71 | 0.709722 |
Target: 5'- cCGGGGGCGGGcccGGGcgGCGGGgGGCg -3' miRNA: 3'- uGCUCCUGCUUc--UCCuaCGCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 95409 | 0.71 | 0.699701 |
Target: 5'- gGCGAGGACGAAGAccgucgccgcGGGccCGGGgGGCa -3' miRNA: 3'- -UGCUCCUGCUUCU----------CCUacGCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 151287 | 0.72 | 0.679495 |
Target: 5'- cCGGGGcCGggGGgcGGcgGCGGugGGCc -3' miRNA: 3'- uGCUCCuGCuuCU--CCuaCGCCugCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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