miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 34287 0.68 0.854938
Target:  5'- cCGGGGGCGGgauGGGGuuuagcgGCGGGgGGCg -3'
miRNA:   3'- uGCUCCUGCUu--CUCCua-----CGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 4834 0.68 0.854938
Target:  5'- gGCGAGGccGCGggGucgggcgucGGGAUcgucCGGACGGCc -3'
miRNA:   3'- -UGCUCC--UGCuuC---------UCCUAc---GCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 27848 0.68 0.854938
Target:  5'- cCGGGGACGggGccGccccGCGGugGGCc -3'
miRNA:   3'- uGCUCCUGCuuCucCua--CGCCugCUG- -5'
5975 5' -55.2 NC_001806.1 + 144050 0.68 0.854158
Target:  5'- gGCGAGGAacaacCGAggggaacGGGGGAUGgaaGGACGGg -3'
miRNA:   3'- -UGCUCCU-----GCU-------UCUCCUACg--CCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 12666 0.69 0.838958
Target:  5'- uGCGAGGACGGcuGGucgucuucccGGAUGUGGGgGAg -3'
miRNA:   3'- -UGCUCCUGCU--UCu---------CCUACGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 37790 0.69 0.838958
Target:  5'- gGCcGGGGCGcGGGGGuccGCGGGCGGg -3'
miRNA:   3'- -UGcUCCUGCuUCUCCua-CGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 24877 0.69 0.838958
Target:  5'- gGCGGGGGCcguGGAGGugcUGgGGGCGGa -3'
miRNA:   3'- -UGCUCCUGcu-UCUCCu--ACgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 65288 0.69 0.836494
Target:  5'- aGCGGGGAgGAGGAGGggGgcccccaagggccuCGGugGGg -3'
miRNA:   3'- -UGCUCCUgCUUCUCCuaC--------------GCCugCUg -5'
5975 5' -55.2 NC_001806.1 + 34073 0.69 0.822226
Target:  5'- gGCGAGGAgacUGggGugGGGGUGuCGGugGGu -3'
miRNA:   3'- -UGCUCCU---GCuuC--UCCUAC-GCCugCUg -5'
5975 5' -55.2 NC_001806.1 + 26825 0.69 0.820514
Target:  5'- cGCGcGGGCGggGAGGggGCGccggagccccccGCGACc -3'
miRNA:   3'- -UGCuCCUGCuuCUCCuaCGCc-----------UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 25106 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25140 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25174 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25208 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25242 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25276 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25310 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25344 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 25378 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 119552 0.69 0.813597
Target:  5'- aGCGGGGGCGccauGGGGGcgGCuGACG-Ca -3'
miRNA:   3'- -UGCUCCUGCu---UCUCCuaCGcCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.