miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 147696 0.67 0.897856
Target:  5'- cGCGGGGGCGGgccccGGAGGcgGCGcuCGcACg -3'
miRNA:   3'- -UGCUCCUGCU-----UCUCCuaCGCcuGC-UG- -5'
5975 5' -55.2 NC_001806.1 + 147180 0.67 0.891257
Target:  5'- cCGAGGaggcggaaGCgGAGGAGGAcGCGGccccgGCGGCg -3'
miRNA:   3'- uGCUCC--------UG-CUUCUCCUaCGCC-----UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 147265 0.67 0.891257
Target:  5'- -aGAGGAgGAAGAGGcgGaggccgccgaGGACGuCa -3'
miRNA:   3'- ugCUCCUgCUUCUCCuaCg---------CCUGCuG- -5'
5975 5' -55.2 NC_001806.1 + 5757 0.67 0.891257
Target:  5'- aACGAGGaACGGGcAGGggGCGGGgcccgggcccCGACu -3'
miRNA:   3'- -UGCUCC-UGCUUcUCCuaCGCCU----------GCUG- -5'
5975 5' -55.2 NC_001806.1 + 141968 0.67 0.891257
Target:  5'- -gGAGGGuCGggGGGc--GCGGACGAg -3'
miRNA:   3'- ugCUCCU-GCuuCUCcuaCGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 151098 0.67 0.891257
Target:  5'- cGCGGGGGuCGcGGGGGucGCGGGgGGCu -3'
miRNA:   3'- -UGCUCCU-GCuUCUCCuaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 57155 0.67 0.890585
Target:  5'- cGCGAGG--GGAGGGGGUGCGcGcauaaagcccagcACGGCg -3'
miRNA:   3'- -UGCUCCugCUUCUCCUACGC-C-------------UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 34384 0.67 0.88443
Target:  5'- cCGAGGugGGugGGuGGGcgGCGGugGcCg -3'
miRNA:   3'- uGCUCCugCU--UC-UCCuaCGCCugCuG- -5'
5975 5' -55.2 NC_001806.1 + 51953 0.68 0.87738
Target:  5'- cCGGuGGGCGuccuGGAUGCuguGGACGACg -3'
miRNA:   3'- uGCU-CCUGCuucuCCUACG---CCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 143115 0.68 0.87738
Target:  5'- cUGGGGGCGuggcugccggGAGGGGccGCGGAUGGg -3'
miRNA:   3'- uGCUCCUGC----------UUCUCCuaCGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 151429 0.68 0.87738
Target:  5'- gGCGGGGGCccaccggcGGGGGGcgGCGGcgggGCGGCc -3'
miRNA:   3'- -UGCUCCUGc-------UUCUCCuaCGCC----UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 34774 0.68 0.87738
Target:  5'- gGCGGGGcgguuCGggGGGGGgggggGgGGGCGGg -3'
miRNA:   3'- -UGCUCCu----GCuuCUCCUa----CgCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 51679 0.68 0.87738
Target:  5'- aGCGGccuGGACGuccccGAGGAccccGUGGGCGACu -3'
miRNA:   3'- -UGCU---CCUGCuu---CUCCUa---CGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 147780 0.68 0.870111
Target:  5'- cGCGGGGGgccCGggGcGGGggGCGGAgccUGGCa -3'
miRNA:   3'- -UGCUCCU---GCuuC-UCCuaCGCCU---GCUG- -5'
5975 5' -55.2 NC_001806.1 + 44388 0.68 0.870111
Target:  5'- cGCGuAGGaACGAccaGGAGGccGCGGGCGu- -3'
miRNA:   3'- -UGC-UCC-UGCU---UCUCCuaCGCCUGCug -5'
5975 5' -55.2 NC_001806.1 + 10043 0.68 0.867889
Target:  5'- aGCGcGGugGggGGuuuguucuGGAacaccccgcguagcUGCGGACGGCc -3'
miRNA:   3'- -UGCuCCugCuuCU--------CCU--------------ACGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 148190 0.68 0.862628
Target:  5'- cGCGGGGcgucCGgcGGGGG-GCGGGCGGu -3'
miRNA:   3'- -UGCUCCu---GCuuCUCCUaCGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 21326 0.68 0.861869
Target:  5'- gGCGAGGACGccGGGGAcGCcGucucgccGCGACa -3'
miRNA:   3'- -UGCUCCUGCuuCUCCUaCGcC-------UGCUG- -5'
5975 5' -55.2 NC_001806.1 + 4834 0.68 0.854938
Target:  5'- gGCGAGGccGCGggGucgggcgucGGGAUcgucCGGACGGCc -3'
miRNA:   3'- -UGCUCC--UGCuuC---------UCCUAc---GCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 34287 0.68 0.854938
Target:  5'- cCGGGGGCGGgauGGGGuuuagcgGCGGGgGGCg -3'
miRNA:   3'- uGCUCCUGCUu--CUCCua-----CGCCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.